Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0439 ATGTCGCACTTCGGACGATCCGGTCCTCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGAGGCCCAGAAGGCGGTAGAAAAGCTTGACGGAAGGAACGTGGATGGAAGAGAAATTATGGTTCAATTTGCCAAGTATGGTCCCAACGCAGAGCGAATTCATAAAGGGAGGATAATAGAAACATCTTCAAAATCAAAAGGCAGGTCAAGAAGCCGCAGTCCTCGGCCAAGGCATCGGGATGAATACAGGGACAGGGATTACAGGAAGAGAAGTCGCAGCAGAAGTAGAGGCAGAAACGATCGTGACAGGTACCGTGGGAAGGAAAGAGATAGTCGCCGTCGGAGCAGAAGCCGCAGTGCAAGTCCTGATCATCACAAGGATCGTGGGAGAGGCAGATATGATGATGAGCGGCGTAGTCGCAGCCGGTCATATGGAAGTGCCTCTCCTGCCCGGCGTAGCCCCAGTCCTCGAGGGAGCCCCTCTCCACGCAGAACACCACCTTCCAGGGAAGAAAGTCCTGTTGGACGCAAGAGAAATGAACGTTCACCTACTCCGAAAAGTGTCTCACCCCGTGGTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATGAATGA 774 0.5155 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVEKLDGRNVDGREIMVQFAKYGPNAERIHKGRIIETSSKSKGRSRSRSPRPRHRDEYRDRDYRKRSRSRSRGRNDRDRYRGKERDSRRRSRSRSASPDHHKDRGRGRYDDERRSRSRSYGSASPARRSPSPRGSPSPRRTPPSREESPVGRKRNERSPTPKSVSPRGRPADSRSPSPHNSDADE* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0439 257 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Vvi18g0439 257 MobiDBLite consensus disorder prediction 122 136 - -
Vvi18g0439 257 SMART rrm1_1 17 90 IPR000504 GO:0003723
Vvi18g0439 257 MobiDBLite consensus disorder prediction 145 190 - -
Vvi18g0439 257 MobiDBLite consensus disorder prediction 102 257 - -
Vvi18g0439 257 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Vvi18g0439 257 Gene3D - 4 104 IPR012677 -
Vvi18g0439 257 SMART rrm2_1 17 90 IPR003954 GO:0003676
Vvi18g0439 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Vvi18g0439 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Vvi18g0439 257 MobiDBLite consensus disorder prediction 217 232 - -
Vvi18g0439 257 CDD RRM_SRSF2_SRSF8 18 90 - -
Vvi18g0439 257 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0439 Vvi-Chr18 4350466 4352554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0439 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.31e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0439 K12891 - vvi:100243776 335.88