Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0431 ATGACCAAGTGCTCTGTAGATAGTGAACTGGGCTGTAGTTTGATGGAAGGGATTTTCCAGCGCCGGAGCTTTTGGCCAAAGAAAACATCTGTTCGTCCACTACCCACAAACAGCAACAGCACATTGAAGGTAACAAGCCCCAGTGATTCCAAGGGGCGACATGGTGGTTCCCGTGAAACTGCCTCGCTCAACTCCATTTCACCTAAACCTCCGCCAAAACTAGATGAGAAGCTAGTCACAACTCCCAACTTAGTACGCTCCAGGCCTTCAACTTCCAGTCATAAAAGTCAAGGTGCTAGGCCCTCAGATGCTGCAAGGAACTCATCGTCCTCCTCTGCTACTTCAAGCCTAAAGCAGCAATCACAATCCCAGGAGTTAACGGACATGAAAAGGCTAAGGAGGGAGCCCAATGGCCTCTACACTGAGCCAAATAGGGCGAGTACTGATCACCACCAATCCTATGAAAGCAAAGCTCTCGTCCCCACTTCTTCAGGCAATGTAATGCCTTTAGGCCACTTGGGTAATTTGAAGCCACTGAGAACTGGGAATTCAATGATCACAGACCTACCGGACTCCACCAATAAAACTCGGTATTACCACCAGAGGAAGCTCAGCGATAGCAGAATTGGAAGTAACGGTGTTATGGGCAACATTACACGGAAGCCCAGCAATGAGAATCCAAAGTCGGGAGGCCGATTTCTAGGTCTGTTGAATAAGTTAGATCCAGAGGCATTGAAGTCAATGGGAAATGAGGAGTACAAGCAGGGCAGATTCAAGGAGGCCTTGGCACTATATAACCAAGCAATTGCCCTCAATGCAAATAAGGCATCGTACCATAGCAATAAGAGCGCGGCTTTAATAGGTTTAGGCCATCTTATGGAAGCAGTAATTGAGTGCAGAGAAGCCATTCAAATTGAGCCTTCTTATCACAGAGCTCATCACCGTCTGGCGACACTATATCTAAGACTGGGAGAAGCCGAGAAAGCATTGAATCACTACAAATACTCAAGCCCCACAGACTCTGAATACATCGCCAAAGCTCAAGCTCTGCAAACACACCTCAGTAGGTGCATAGAAGCCCGAAATTTGAGAGACTGGAACACTTTACTTAAGGAGGCAAGGTGTGCAATATCTTCCGGAGCCGATTCAGCTCCCCAGATCTATGCTTTCCAAGCTGAGGCCTTATTGAAGCTCCATAGGCACCAAGAGGCCTATGCTACCTTCCGGAAGGGACCCAAGTTCCAGATTGATTCATGTACTCAGTTCTTTGGACCGGCTGCTAGTGCATATATGTTAATAATTCAGGCACAGCTTTACATGACCATGGGCAGGTTAGAGGATGCCGTGGCCTTGGCTCAGAAAGCAGCTCGACTTGATTCAAGTAACCATGAGGTGACCACAGTGTTGAGAAGAGTTCTAGCTGTGGAATCGGCCCGATTGAGGGGCAATCAGCTCTTCAATGCATCAAAATTTTTGGAGGCTTGCGTTACGTACAATGAAGGATTAGACCATGACCCCTACAACACCATTTTGTTATGCAACCGAGCAGCTTGTCGATCTAAACTTGGCCAGTTTGAGAAAGCGGTTGAAGACTGCACCATGGCACTCATCGTGCAGCCTTCTTACAGCAAGGCAAGGTTGCGTAGGGCCAATTGCAATGCCAAGTTGGAAAGATGGGAGGCCTCTATTCAAGATTATGAGATGTTGATAAGAGAAACTCCGGGTGACGAGGAGGTGGGCCGGGCATTGTTTGAGGCCAAGATCCAGCTCAAAAAGCAACGTGGTGAGGACATTAAGGACATGAAGTTTGGTTCGAACCTGGTCTTCATCTCCAACAATGAGCGTTTCAGACATTTTGTAACCTCCCCAGGGATGTCGGTGGTCCTCTTCTGCAACAAAACTAGTCACAAGCAAGTATTGCAGCTCCTTGAGCAAGTCTGCAAGAGATACCCATCCGTCTACTTCCTCAAGGTGGAGGTTGAAGACCACCCTTACTTGGCAAAGTCAGAGAGTGTGAGCTCCGTTCCGGCTTTTAAGATATACAAGAATGGATCAAGGGTCAAAGAAATTCCAGGCAACAATCGTGAATTATTAGAAAGCTCGGTCAAATTGTACAGCAGTTGA 2124 0.4746 MTKCSVDSELGCSLMEGIFQRRSFWPKKTSVRPLPTNSNSTLKVTSPSDSKGRHGGSRETASLNSISPKPPPKLDEKLVTTPNLVRSRPSTSSHKSQGARPSDAARNSSSSSATSSLKQQSQSQELTDMKRLRREPNGLYTEPNRASTDHHQSYESKALVPTSSGNVMPLGHLGNLKPLRTGNSMITDLPDSTNKTRYYHQRKLSDSRIGSNGVMGNITRKPSNENPKSGGRFLGLLNKLDPEALKSMGNEEYKQGRFKEALALYNQAIALNANKASYHSNKSAALIGLGHLMEAVIECREAIQIEPSYHRAHHRLATLYLRLGEAEKALNHYKYSSPTDSEYIAKAQALQTHLSRCIEARNLRDWNTLLKEARCAISSGADSAPQIYAFQAEALLKLHRHQEAYATFRKGPKFQIDSCTQFFGPAASAYMLIIQAQLYMTMGRLEDAVALAQKAARLDSSNHEVTTVLRRVLAVESARLRGNQLFNASKFLEACVTYNEGLDHDPYNTILLCNRAACRSKLGQFEKAVEDCTMALIVQPSYSKARLRRANCNAKLERWEASIQDYEMLIRETPGDEEVGRALFEAKIQLKKQRGEDIKDMKFGSNLVFISNNERFRHFVTSPGMSVVLFCNKTSHKQVLQLLEQVCKRYPSVYFLKVEVEDHPYLAKSESVSSVPAFKIYKNGSRVKEIPGNNRELLESSVKLYSS* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0431 707 MobiDBLite consensus disorder prediction 23 166 - -
Vvi18g0431 707 SMART tpr_5 543 576 IPR019734 GO:0005515
Vvi18g0431 707 SMART tpr_5 385 418 IPR019734 GO:0005515
Vvi18g0431 707 SMART tpr_5 242 275 IPR019734 GO:0005515
Vvi18g0431 707 SMART tpr_5 310 343 IPR019734 GO:0005515
Vvi18g0431 707 SMART tpr_5 475 508 IPR019734 GO:0005515
Vvi18g0431 707 SMART tpr_5 429 462 IPR019734 GO:0005515
Vvi18g0431 707 SMART tpr_5 509 542 IPR019734 GO:0005515
Vvi18g0431 707 SMART tpr_5 276 309 IPR019734 GO:0005515
Vvi18g0431 707 SUPERFAMILY TPR-like 477 593 IPR011990 GO:0005515
Vvi18g0431 707 Pfam Thioredoxin 615 699 IPR013766 -
Vvi18g0431 707 Gene3D Glutaredoxin 600 706 - -
Vvi18g0431 707 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 7 703 IPR044534 -
Vvi18g0431 707 Coils Coil 549 569 - -
Vvi18g0431 707 Pfam Tetratricopeptide repeat 433 461 IPR019734 GO:0005515
Vvi18g0431 707 Gene3D Tetratricopeptide repeat domain 241 595 IPR011990 GO:0005515
Vvi18g0431 707 MobiDBLite consensus disorder prediction 141 163 - -
Vvi18g0431 707 CDD TRX_family 614 703 - -
Vvi18g0431 707 SUPERFAMILY Thioredoxin-like 581 700 IPR036249 -
Vvi18g0431 707 SUPERFAMILY TPR-like 241 465 IPR011990 GO:0005515
Vvi18g0431 707 MobiDBLite consensus disorder prediction 209 231 - -
Vvi18g0431 707 MobiDBLite consensus disorder prediction 209 226 - -
Vvi18g0431 707 Pfam Tetratricopeptide repeat 521 576 - -
Vvi18g0431 707 MobiDBLite consensus disorder prediction 30 67 - -
Vvi18g0431 707 ProSiteProfiles TPR repeat profile. 429 462 IPR019734 GO:0005515
Vvi18g0431 707 MobiDBLite consensus disorder prediction 83 126 - -
Vvi18g0431 707 Pfam TPR repeat 249 282 - -
Vvi18g0431 707 ProSiteProfiles TPR repeat profile. 242 275 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0431 Vvi-Chr18 4284177 4287720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0431 243 400 U-box Gene Family AT3G07370 26.519 2.18e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0431 K09527 - vvi:100242128 1377.07