Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0429 ATGACTCTATATATCTGCAAAAGCCTCATCTCGCTCTATCTCAAAAGCTCTCAACACCACCTCCACAAACCTCACTTTTCCTGCTCCCTCTCTCTCCTCTTCTTCTCCTCCTCCGGACCCCAAAAAAAGAAACCAGCTATCCCCGTCTCTACTGCCGATTACTTGATCAAGCGGCACCAGTTCTCCCAAGAAACCGCTCTAACGGCCGCTTCTGTGATAACATATTTGAAAAAACCCGAGAAGTCTGATTCCATACTAGCATTCCTCAAGGAAAGCGGTTTTTCCCAGACCCATCTCGAGAAAACAGTCAAACGAGTCCCCCGTGTTCTCTCTGCCAACCTTGACAAGACCATCAAGCCCAAAATCAAGATTTTCCAGGATTTGGGCTGTACGCCCACCGACATTGCTTATATTATATCGCAAGACCCGTGGATCCTAAATAGGAGTGCTAATAATGGCTTGATGCCATCAATTGTAGCATTGCAGAGTGTTATGGGTTCGAACTCGGATGTCTCTAAGGTTTTGAAGATTTGTGCGCGGTTTCTGAAACATGATTTAGGGAAGACCTTGAAACCTAATATTGAATTCATGAAGAGTTGTGGAATCAGCACGTCACAGATAAAGAAAGTCGTATTTAGCTTCCCGAGATTTTTGCTGCATAAGCCGGAGAGTATTAAAGATTCTGTGAGGAGGGTTGATGAAATGGGGTGTGATAGAAAGTCTAAGATGTATCTTCATGCAATTCGAAATTTGAGTTCAATGACACTAGAGAATTGGGAACTGAAATTGAAACTTTTCCGGAGTCTGGGATTTTCAGAAAATGAAATTGTAACATCGTTTAGGAAGGCGCCTCAGGTTTTTGCACTATCTGAGAGGAAAATTATAGAGGGAACCAGATTTCTGCTTACTGTAGGGAATTCTGATATGTCTTATTTGGTTAACCACGCAGAATTGCTTATTTTCAGCATTGAGAAAAGGCTCAAACCCCGTTTTCGGGTCTTGGAGTTTTTGCAAGGTTCATAG 1023 0.4282 MTLYICKSLISLYLKSSQHHLHKPHFSCSLSLLFFSSSGPQKKKPAIPVSTADYLIKRHQFSQETALTAASVITYLKKPEKSDSILAFLKESGFSQTHLEKTVKRVPRVLSANLDKTIKPKIKIFQDLGCTPTDIAYIISQDPWILNRSANNGLMPSIVALQSVMGSNSDVSKVLKICARFLKHDLGKTLKPNIEFMKSCGISTSQIKKVVFSFPRFLLHKPESIKDSVRRVDEMGCDRKSKMYLHAIRNLSSMTLENWELKLKLFRSLGFSENEIVTSFRKAPQVFALSERKIIEGTRFLLTVGNSDMSYLVNHAELLIFSIEKRLKPRFRVLEFLQGS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0429 340 PANTHER CGI-12 PROTEIN-RELATED 51 337 IPR003690 GO:0003690|GO:0006355
Vvi18g0429 340 SMART mt_12 136 168 IPR003690 GO:0003690|GO:0006355
Vvi18g0429 340 SMART mt_12 172 203 IPR003690 GO:0003690|GO:0006355
Vvi18g0429 340 SMART mt_12 100 131 IPR003690 GO:0003690|GO:0006355
Vvi18g0429 340 SMART mt_12 242 272 IPR003690 GO:0003690|GO:0006355
Vvi18g0429 340 SMART mt_12 309 340 IPR003690 GO:0003690|GO:0006355
Vvi18g0429 340 SMART mt_12 277 307 IPR003690 GO:0003690|GO:0006355
Vvi18g0429 340 SMART mt_12 208 238 IPR003690 GO:0003690|GO:0006355
Vvi18g0429 340 FunFam Mitochondrial transcription termination factor family protein 154 338 - -
Vvi18g0429 340 Pfam mTERF 158 334 IPR003690 GO:0003690|GO:0006355
Vvi18g0429 340 Pfam mTERF 86 167 IPR003690 GO:0003690|GO:0006355
Vvi18g0429 340 Gene3D Transcription termination factor 3, mitochondrial 165 340 IPR038538 -
Vvi18g0429 340 Gene3D Transcription termination factor 3, mitochondrial 55 164 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0429 Vvi-Chr18 4274062 4275210 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi18g0429 mTERF 5.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0429 K15032 - vvi:104882482 659.448