Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0425 ATGACCAACCAGAATGTGGCGGTTTCTGATCCAAAATCAGCTATTGGTATGGCGATTGACGTTATTGTGTCGAACTCTTCTTTTTTCTCACCGGCGGTGCGTAAGCCGCCGACTGTACCGGGTGGGTACATCACCATTTCTCTTAAGAAACTCGAAACTGGAGGAGCCGGAGGAGCCGGTAGAGTCGGTGCCTGGGTGGATTCAATGAGAGCTTCGTCTCCTACCCATATCAAATCCACTCCTCTTTCTGATAGTGAAGCCCTGAGTTCCTGGATGCTTCATCATCCGTCAGCTTTGCGCACGTTCGAGCAGATAACGAATGCTTCGGAAGGGAAGCAGATTGTGATGTTTCTCGATTATGATGGTACCCTCTCGCCGATTGTGGAAGACCCAGATCAAGCTTTCATGTCTAAAGAGATGCGAGCCGCCGTAAAGGATGTCGCCAGATATTTCCCCACTGCCATAGTGAGCGGGAGGTGCAGAGATAAGGTCTATAGATTTGTTAAATTATCAGAGCTCTATTATGCAGGCAGCCATGGCATGGACATCAAAGGACCAGCCAAAGGCCGCAAATACAAGAAAGGTGATCAATCCCTTCTCTGCCAACCCGCCAGCGAATTTTTACCCATGATCGATGAGGTGTACAAGGCCCTGCTAGAGAAAACCAAATCCACCCCAGGAGCAAAGGTGGAAAACAACAAGTTCTGCTTATCAGTACACTTTCGCTGTGTTGACGAGCAGAGATGGACAGCATTGGCCGAGCAGGTTAGATTAGTCCTTAACCAATACCCAAAGCTCAGATTGACTCAAGGCAGGAAGGTATTAGAGATTCGTCCTACCATCAAATGGGACAAGGGAAACGCCCTCGAATTCTTGTTGGAGTCACTAGGATATGCCAATTCTAATGATGTCTTTCCAATCTACATTGGAGATGATCGAACAGATGAAGATGCATTCAAGGTTTTGCGCAATCGAGGACAAGGGTTTGGGATTCTTGTGTCCAAGTTCCCCAAGGAAACAAGTGCCTCTTATTCTTTGCAAGAACCAACTGAGGTTATGAACTTTTTGCAACTTTTGGTGGAGTGGAAAAGAAGGTCCTTGCAAGACGATATATTGAGTAGAGACTGA 1128 0.4699 MTNQNVAVSDPKSAIGMAIDVIVSNSSFFSPAVRKPPTVPGGYITISLKKLETGGAGGAGRVGAWVDSMRASSPTHIKSTPLSDSEALSSWMLHHPSALRTFEQITNASEGKQIVMFLDYDGTLSPIVEDPDQAFMSKEMRAAVKDVARYFPTAIVSGRCRDKVYRFVKLSELYYAGSHGMDIKGPAKGRKYKKGDQSLLCQPASEFLPMIDEVYKALLEKTKSTPGAKVENNKFCLSVHFRCVDEQRWTALAEQVRLVLNQYPKLRLTQGRKVLEIRPTIKWDKGNALEFLLESLGYANSNDVFPIYIGDDRTDEDAFKVLRNRGQGFGILVSKFPKETSASYSLQEPTEVMNFLQLLVEWKRRSLQDDILSRD* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0425 375 Gene3D - 114 196 IPR023214 -
Vvi18g0425 375 Gene3D - 209 372 IPR023214 -
Vvi18g0425 375 FunFam Trehalose 6-phosphate phosphatase 114 200 - -
Vvi18g0425 375 FunFam Trehalose 6-phosphate phosphatase 204 280 - -
Vvi18g0425 375 SUPERFAMILY HAD-like 115 363 IPR036412 -
Vvi18g0425 375 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 44 368 IPR044651 GO:0004805|GO:0005992
Vvi18g0425 375 NCBIfam trehalose-phosphatase 112 360 IPR003337 GO:0003824|GO:0005992
Vvi18g0425 375 Pfam Trehalose-phosphatase 117 349 IPR003337 GO:0003824|GO:0005992
Vvi18g0425 375 FunFam Trehalose 6-phosphate phosphatase 210 369 - -
Vvi18g0425 375 NCBIfam HAD-IIB family hydrolase 116 324 IPR006379 -
Vvi18g0425 375 CDD HAD_TPP 115 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0425 Vvi-Chr18 4254998 4257290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0425 105 361 Trehalose Biosynthesis Gene Families AT1G06410 26.087 6.47e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0425 K01087 - vvi:100243648 736.487