Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0423 ATGGCACCTACGGTGGATTTCTACAGTAGCAGACCTCTTCAATCAGCTTCATGTGGCGGTGAGCTCATGGAAGCACTGGAACCTTTTATGAAAAATGCTTCTTCTACTTCCCCTTCTTCAACCCTATCTCCTTCGTCTTCACCTTCTACCTCTTCTTTCTATCCTTCATCCGATTTCTACTCTCCTATCTCAACCCAGTATCCAGATGGATGCTCGACCTCGACCACCCATGTAATTTCCCAAGGGTTCTCGAGTCATGACCTACAGGGTTTCGAGCATTCGGGTCCAATTGGGCTCAATCACCTAACACCCTCTCAGATTCACCAGATCCAAGCCCAGATCCAGCTTCAGCAACACCACAACCACATGCCTGCCGTGGCTGCTGCAGCTTCGTTCAACACCCAGAATCTCCCCCAGTGGCAACAGCGTCAACAAGCCCCTAACTTCCTCAGTCCGAAGCCCATCCCCATGAAGCAAGTGGGCGTACCTCCAAAACCCACAAAGCTCTATAGAGGGGTGAGACAACGGCATTGGGGAAAATGGGTCGCCGAGATCCGACTTCCCAAGAACCGAACCAGGCTCTGGCTTGGCACCTTCGACACCGCCGAAGAAGCCGCCTTGGCTTACGACAAGGCCGCGTACAAACTTAGAGGTGACTTCGCGAGGCTTAATTTCCCAAATCTCCGCCACCAAGGATCCCATATCGGAGGCGAATTTGGGGACTACAAGCCTCTCCATTCCTCAGTTGACGCAAAGCTTCAAGCCATTTGCCAGAGCTTGGCTGAAACCCAGAAACAGGGGAAGCCTACCCAGGGCAAGAAATCCAGGTCGCGGGCGGTGGCGCCCTCTGCGTCACAGCCGGTGACGGTTTCGGAGAGTTCGACGTTGTCTGAACAGGGATCGGAAGATTGTAAGGTGGAGCCAACTTCATCGTCCATGTTTACTGAGAGTGATGGGTCCGGAGGATCCTCGCCCCTCTCGGATCTTACTTTCCCAGATGATTGCGAAGAAGCACCGTTCTACGGTGCTTGGGAGAATTTCAATTTGCAGAAATATCCCTCTAACGAGATCGATTGGGCAGCTATTTCATCCCAATGGCCATGA 1104 0.5254 MAPTVDFYSSRPLQSASCGGELMEALEPFMKNASSTSPSSTLSPSSSPSTSSFYPSSDFYSPISTQYPDGCSTSTTHVISQGFSSHDLQGFEHSGPIGLNHLTPSQIHQIQAQIQLQQHHNHMPAVAAAASFNTQNLPQWQQRQQAPNFLSPKPIPMKQVGVPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSHIGGEFGDYKPLHSSVDAKLQAICQSLAETQKQGKPTQGKKSRSRAVAPSASQPVTVSESSTLSEQGSEDCKVEPTSSSMFTESDGSGGSSPLSDLTFPDDCEEAPFYGAWENFNLQKYPSNEIDWAAISSQWP* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0423 367 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 363 - -
Vvi18g0423 367 ProSiteProfiles AP2/ERF domain profile. 169 226 IPR001471 GO:0003700|GO:0006355
Vvi18g0423 367 MobiDBLite consensus disorder prediction 31 51 - -
Vvi18g0423 367 CDD AP2 168 228 IPR001471 GO:0003700|GO:0006355
Vvi18g0423 367 MobiDBLite consensus disorder prediction 262 331 - -
Vvi18g0423 367 MobiDBLite consensus disorder prediction 148 167 - -
Vvi18g0423 367 FunFam Ethylene-responsive transcription factor 2 168 227 - -
Vvi18g0423 367 MobiDBLite consensus disorder prediction 276 327 - -
Vvi18g0423 367 PRINTS Ethylene responsive element binding protein signature 192 208 IPR001471 GO:0003700|GO:0006355
Vvi18g0423 367 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Vvi18g0423 367 SUPERFAMILY DNA-binding domain 169 227 IPR016177 GO:0003677
Vvi18g0423 367 Gene3D AP2/ERF domain 169 227 IPR036955 GO:0003700|GO:0006355
Vvi18g0423 367 SMART rav1_2 169 232 IPR001471 GO:0003700|GO:0006355
Vvi18g0423 367 Pfam AP2 domain 170 218 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0423 Vvi-Chr18 4220896 4221999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0423 1 362 AP2-EREBP Transcription Factor Family AT1G78080 53.067 2.04e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi18g0423 AP2 8.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0423 K09286 - vvi:100245515 680.633