Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0407 ATGGTGGCCCTAGGAGCAATGAATATTGTTGGTTCAATGACTTCTTGCTATGTGGCAACAAGTTCCTTCTCTCGTTCAGCCGTAAACTACATGGCCCGATGCCAAACTACAGTCTCTAACATTGTGATGTCCTGTGTTGTTTTTCTAACCTTGGAATTCATCACACCTCTTTTCAAATACACCCCAAATGCCATTCTTGCTTCCATCATTATATCTGCTGTGATTGGCCTAATTGACTATGAGGCAGCAATTCTGATATGGAAGATTGATAAATTTGATTTTGTTGCTTGCATGGGAGCTTTCTTTGGCGTGGTTTTTTCCTCTGTTGAGATTGGTCTCTTAATTGCGGTTTCCATATCCTTTGCCAAGATCCTCCTACAATTTACAAGGCCACGGACTGCAATTCTTGGGAGGCTCCCTAGGACAACCGTTTACAGGAACATCCAACAATATCCAGAGGCAACTAAAATTCCAGGATTGTTAATTGTGAGGGTTGATTCTGCAATCTACTTTTCCAATTCTATCTATGTCAAGGAAAGGATACTGAGATGGCTGACTGATGAGGAAGAACAGTTGAAAGAAGCCAACCTACCAAGAGTCCAGTTTTTGATTGTTGAGATGTCCCCTGTAACTGACATAGACACCAGTGGCATCCATGCATTGGAAGAGTTACACAGGAGTCTCCTAAAGAGAGATTTGTTGTGCATCTGGTTCTGGCAAATCCTGGGCAAGTGGTGA 738 0.4255 MVALGAMNIVGSMTSCYVATSSFSRSAVNYMARCQTTVSNIVMSCVVFLTLEFITPLFKYTPNAILASIIISAVIGLIDYEAAILIWKIDKFDFVACMGAFFGVVFSSVEIGLLIAVSISFAKILLQFTRPRTAILGRLPRTTVYRNIQQYPEATKIPGLLIVRVDSAIYFSNSIYVKERILRWLTDEEEQLKEANLPRVQFLIVEMSPVTDIDTSGIHALEELHRSLLKRDLLCIWFWQILGKW* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0407 245 Gene3D STAS domain 130 239 IPR036513 -
Vvi18g0407 245 PANTHER SULFATE TRANSPORTER 1 233 IPR001902 GO:0016020|GO:0055085
Vvi18g0407 245 ProSiteProfiles STAS domain profile. 150 228 IPR002645 -
Vvi18g0407 245 Pfam Sulfate permease family 1 98 IPR011547 GO:0016020
Vvi18g0407 245 Pfam STAS domain 151 233 IPR002645 -
Vvi18g0407 245 CDD STAS_SulP_like_sulfate_transporter 151 232 - -
Vvi18g0407 245 SUPERFAMILY SpoIIaa-like 152 232 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0407 Vvi-Chr18 4070013 4071815 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0407 1 233 Inorganic Solute Cotransporters AT1G22150 78.970 4.83e-116 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0407 K17470 - egr:104419925 392.889