Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0404 ATGCACTCATTACAGACAGAGACCCTCTCCATGCCCATGGAGCAGCAACAGCAGCTCAACATTGAAGATGGTAGCAAGACTCAGAGGGCTGAGTGGGTGCTTAATTCCCCTGAACCGCCAGGTCTATGCCATGAGATTGTCAGTTCAATAAAATCGGCTGTTTTTCCTAATGGAGGCAAGCACTCTTCATCCTCCACAAAGCAAACTCGATCTACAGCCGCAGGTGTTGTTTCATTCTTGTATGGTCTATTCCCAATTCTTACCTGGGGAAGAAATTACAAGGCTACAAAGTTCAGAAACGATTTAATGGCAGGCTTAACTCTAGCAAGTTTAAGCATTCCTCAGAGCATCGGATATGCAACTCTGGCGAACCTCGCACCTCAGTATGGTCTATACACAAGCGTGGTTCCGCCTCTGGTTTATGCTTTAATGGGAAGCTCAAGAGAGATAGCCATTGGACCGGTAGCTGTGGTTTCCTTGCTGCTGTCTTCGATGATTCAGAATGTAGTAGATCCTGTAGCTAATGCCGTTGCCTACAGAAAGCTCGTCTTGACAGTAACTTTCTTTGCCGGTACCTTCCAATTCATATTTGGATTGTTCAGGCTGGGTTTTCTGGTGGATTTTCTCTCACATGCTGCCATTGTTGGATTCATGGGAGGTGCAGCCATTGTCATTGGCCTTCAACAACTGAAGGGGCTACTTGGAATCAGTCACTTCACCACCAAAACTGATGTTGTTTCAGTGTTGGAGGCTGTTTTCAGGTCACTTCATCATCAATGGTACCCCCTGAACTTTGTCCTCGGTTGTTCATTCCTGATTTTCATCCTATTTACCAGGTTTATTGGTAGAAGGAACAAAAAGCTTTTCTGGTTGCCAGCGATTGCTCCTCTGATATCGGTTGTTTTATCTACTGCTATAGTCTTCCTGACAAAGGCAGATGAGCATGGTGTTAAGATAGTAAAGCACATCAAACGAGGCTTGAACCCGATTTCTGCTCACGAATTACAGTTTAGTGGGCAACATGTGGGACAAGCAGCCAAAATTGGATTAGTTTCTGCCATTGTTGCTCTCACTGAAGCCATTGCTGTTGGCCGATCGTTTGCTTCCATTAGAGGCTACCACCTTGATGGGAACAAGGAAATGGTAGCCATGGGCTTCATGAATATTGCAGGATCTTTGACCTCTTGCTATGTAGCAACTGGTTCTTTTTCGAGGACCGCCGTAAATTTCAGTGCAGGATGTGAAACAGTGGTATCAAACATAGTAATGGCCATTGCAGTGTTTTTATCACTGGAATTGTTAACTAGGCTATTGTACTTCACCCCAATTGCCATTCTTGCTTCAATTATTCTATCAGCTCTCCCTGGACTGATTGACATACCTGAAGCTTACCATATCTGGAAGGTAGACAAAATGGACTTCCTTGCTTGTGCCGGTGCCTTCTTTGGAGTTCTGTTTGTATCAGTGGAGATTGGTCTTCTAGCTGCGGTAACAATCTCATTTGCAAAGATAATACTAAATTCCATTAGGCCCAGCGTAGAAGGATTGGGCAAACTCCCTGGAACAGATATCTTCTGTGACATCAATCAATATCCCATGGCCATCAAAACTCCAGGCATCTTGATTGTTCGCATCAACTCCGGATTGCTTTGCTTTGCTAATGCCAATTTCGTAAGAGAAAGAATAATGAAGAGGGTGACTGAAAAAGACGAAGAAGGCAAAGAAAACTCAAAGGAAAGAACTCAAGCAGTAATCCTTGACATGTCCACTGTCATGAACATTGACACTTCGGGAATCTGTGCGCTACAAGAAGTGTACAATAAGTTGGTTTCACATAACATACATTTAGCAGTAGCCAATCCAAGGTGGCAAGTGATACACAAGTTGAAGTTAGCCAAAGTTGTAGATAAAATTGGGAAAGACTGGATTTTCCTCAGTGTTGGGGAAGCTGTAGATGCATGCAGCTCTAAAATGGTCAATTTTAGCAGCTGTTGA 1995 0.4376 MHSLQTETLSMPMEQQQQLNIEDGSKTQRAEWVLNSPEPPGLCHEIVSSIKSAVFPNGGKHSSSSTKQTRSTAAGVVSFLYGLFPILTWGRNYKATKFRNDLMAGLTLASLSIPQSIGYATLANLAPQYGLYTSVVPPLVYALMGSSREIAIGPVAVVSLLLSSMIQNVVDPVANAVAYRKLVLTVTFFAGTFQFIFGLFRLGFLVDFLSHAAIVGFMGGAAIVIGLQQLKGLLGISHFTTKTDVVSVLEAVFRSLHHQWYPLNFVLGCSFLIFILFTRFIGRRNKKLFWLPAIAPLISVVLSTAIVFLTKADEHGVKIVKHIKRGLNPISAHELQFSGQHVGQAAKIGLVSAIVALTEAIAVGRSFASIRGYHLDGNKEMVAMGFMNIAGSLTSCYVATGSFSRTAVNFSAGCETVVSNIVMAIAVFLSLELLTRLLYFTPIAILASIILSALPGLIDIPEAYHIWKVDKMDFLACAGAFFGVLFVSVEIGLLAAVTISFAKIILNSIRPSVEGLGKLPGTDIFCDINQYPMAIKTPGILIVRINSGLLCFANANFVRERIMKRVTEKDEEGKENSKERTQAVILDMSTVMNIDTSGICALQEVYNKLVSHNIHLAVANPRWQVIHKLKLAKVVDKIGKDWIFLSVGEAVDACSSKMVNFSSC* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0404 664 FunFam Sulfate transporter 31 510 657 - -
Vvi18g0404 664 CDD STAS_SulP_like_sulfate_transporter 531 647 - -
Vvi18g0404 664 ProSiteProfiles STAS domain profile. 547 654 IPR002645 -
Vvi18g0404 664 SUPERFAMILY SpoIIaa-like 535 655 IPR036513 -
Vvi18g0404 664 PANTHER SULFATE TRANSPORTER 64 655 IPR001902 GO:0016020|GO:0055085
Vvi18g0404 664 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271|GO:0008272
Vvi18g0404 664 Pfam Sulfate permease family 98 478 IPR011547 GO:0016020
Vvi18g0404 664 Pfam STAS domain 531 650 IPR002645 -
Vvi18g0404 664 NCBIfam sulfate permease 85 650 IPR001902 GO:0016020|GO:0055085
Vvi18g0404 664 Gene3D STAS domain 510 658 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0404 Vvi-Chr18 4048925 4052849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0404 25 654 Inorganic Solute Cotransporters AT5G10180 68.196 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0404 K17469 - vvi:100252269 1279.62