Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0400 ATGGGTCGTGGTAAGCAAGAGATGAGGAGAATAGAAGATAAAGCAACTCGGCAGGTTTCATTTTCAAGGCGGAAGAAGGGACTCATTAAGAAGGCGTACGAGCTTTCTGTACTCTGTGATATTGATATTGCACTGATCATGTTCCCTCCCTCAGGCCGTCTCACTCAATTTTCGGGCAAAAAAAGGATGGAGGAAGTTTTCACTCGTTACATGCATCTCACAGACGAAGAAAGAGAAGAGTATGCTCTTGAATTACTTGTCCAGTTTGCATTTGAAAGAGTTTGGAGTTCTTAA 294 0.4252 MGRGKQEMRRIEDKATRQVSFSRRKKGLIKKAYELSVLCDIDIALIMFPPSGRLTQFSGKKRMEEVFTRYMHLTDEEREEYALELLVQFAFERVWSS* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0400 97 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g0400 97 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g0400 97 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g0400 97 PANTHER MADS BOX PROTEIN 3 77 - -
Vvi18g0400 97 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vvi18g0400 97 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Vvi18g0400 97 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g0400 97 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Vvi18g0400 97 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi18g0400 97 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0400 Vvi-Chr18 4014840 4015257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0400 1 79 Type I MADS-box Gene Family AT1G77950 64.557 7.96e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi18g0400 SRF-TF 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0400 - - vvi:109121591 175.252