Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0396 ATGGGCTTCGCTCACGTGATCTCCGCATGCAAAGGGCCTCCTCCTTCACCTGGTGCAGATGACAAAAAAGTGAAAAACCCTAGCAGTACTGCATTGCTGCTTCTTCCCCGCCTCTGGTGTTACAACTCTGGGGTTTCCAGTCCAACAAAGAAGTCTCATGAGGGCATCAACAACAGGCTGGCTCTTGTGATGAAGAGTGGCAAATATACTCTAGGCCACAAAACCGTTCTTCGTTCCCTCAGGAGCTCCAAGGGAAAGCTAATTTTAATTTCCAACAATTGCCCCCCTTTGCGCAAGTCTGAAATCGAGTACTATGCAATGCTCTCGAAGGTCGGGGTTCATCATTACAATGGAAGTAAGTACTCGATTAACAAGTAG 378 0.4762 MGFAHVISACKGPPPSPGADDKKVKNPSSTALLLLPRLWCYNSGVSSPTKKSHEGINNRLALVMKSGKYTLGHKTVLRSLRSSKGKLILISNNCPPLRKSEIEYYAMLSKVGVHHYNGSKYSINK* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0396 125 SUPERFAMILY L30e-like 55 122 IPR029064 -
Vvi18g0396 125 ProSitePatterns Ribosomal protein L30e signature 1. 66 90 IPR022991 -
Vvi18g0396 125 FunFam 60S ribosomal protein L30 45 125 - -
Vvi18g0396 125 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 56 119 IPR004038 -
Vvi18g0396 125 PANTHER RIBOSOMAL PROTEIN L30 48 121 IPR039109 GO:0003723
Vvi18g0396 125 Gene3D - 48 125 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0396 Vvi-Chr18 3979272 3980165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0396 49 119 Cytoplasmic Ribosomal Protein Gene Family AT1G77940 87.324 1.02e-40 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0396 K02908 - vvi:100253901 144.821