Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0381 ATGAGCTCTTCATCAACTCAATTTGCCACCTCAAGAAGGATCGGCATGCATGAGCCACTCCACCAGATTAGCATGTGGAGAGATACCTTCAAAGGTGATAGTAATCCAATTACGGGTGCATCCACAATCATGCAGGTGGATACAATGCTAGACAACAAGTCGGAAAGTACCTCTCATGACTCACTAGGGCCTTCAGGAAACAGTCAACCAGAAGACAGAACCACTGATAAGACACAAAGGCGATTGGCACAAAATCGTGAAGCTGCCCGTAAAAGTCGTTTAAGGAAAAAGGCTTATGTTCAGCAATTAGAAACAAGCAGATTGAAGCTGACAGAACTGGAGCAGGAGCTTGAGAGAGCCAGACAGCAGGGTTTGTACATTGGGGGTTCCTTAGATACTACTCGAGTAGGTTTTTCTGGAACTATAAATTCAGGGATTGCCACGTTTGAGATGGAATATGGGCACTGGGTTGAGGAGCAACATAGACAGAATTGTGAGCTTAGGAATGCTCTGCAAGCTCATGTAACTGATATAGAGCTTCGTATACTTGTGGAAAGTGCTTTAAATCACTATTATGAACTTTTTCGCATGAAGGCTGATGCTGCAAAGGCAGATGTCTTTTATCTTATGTCTGGCATGTGGAGAACATCAGCTGAACGATTTTTTCTCTGGATTGGAGGATTCCGCCCATCAGAGCTTCTAAATGTTCTTATGCCACATTTTGAGCCTTTGACTGATCAACAACTCCTGGATGTCTGCAACCTACGACAATCATCACAACAAGCTGAAGATGCTTTGTCTCAAGGAATGGATAAACTTCAGCAGACTCTGGCCCAGAGCATAGTTACTGATCCAGTGGGTGCTGGAAACTATAGGTCTCAGATGGCTGAAGCAGTGGAGAAGCTGGATGCATTAGAGAGCTTTGTAAACCAGGCAGATCATCTTCGTCAGCAAACCCTGCGACAAATGTCTCATCTACTAACAACCCGTCAAGCAGCCCGAGGCCTACTTGCTTTGGGGGAGTACTTTCATCGTCTTCGAGCTCTTAGTTCTCTTTGGGCTGCTCGTCCCCGTGAGCCTGCCTAG 1086 0.4558 MSSSSTQFATSRRIGMHEPLHQISMWRDTFKGDSNPITGASTIMQVDTMLDNKSESTSHDSLGPSGNSQPEDRTTDKTQRRLAQNREAARKSRLRKKAYVQQLETSRLKLTELEQELERARQQGLYIGGSLDTTRVGFSGTINSGIATFEMEYGHWVEEQHRQNCELRNALQAHVTDIELRILVESALNHYYELFRMKADAAKADVFYLMSGMWRTSAERFFLWIGGFRPSELLNVLMPHFEPLTDQQLLDVCNLRQSSQQAEDALSQGMDKLQQTLAQSIVTDPVGAGNYRSQMAEAVEKLDALESFVNQADHLRQQTLRQMSHLLTTRQAARGLLALGEYFHRLRALSSLWAARPREPA* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0381 361 Gene3D - 76 125 - -
Vvi18g0381 361 MobiDBLite consensus disorder prediction 73 89 - -
Vvi18g0381 361 MobiDBLite consensus disorder prediction 1 20 - -
Vvi18g0381 361 Coils Coil 96 123 - -
Vvi18g0381 361 FunFam BZIP family transcription factor 76 125 - -
Vvi18g0381 361 MobiDBLite consensus disorder prediction 53 72 - -
Vvi18g0381 361 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 75 119 IPR004827 GO:0003700|GO:0006355
Vvi18g0381 361 ProSiteProfiles DOG1 domain profile. 146 356 IPR025422 GO:0006351|GO:0043565
Vvi18g0381 361 SMART brlzneu 73 136 IPR004827 GO:0003700|GO:0006355
Vvi18g0381 361 MobiDBLite consensus disorder prediction 53 95 - -
Vvi18g0381 361 PANTHER TRANSCRIPTION FACTOR TGA9 1 359 - -
Vvi18g0381 361 Pfam bZIP transcription factor 75 117 IPR004827 GO:0003700|GO:0006355
Vvi18g0381 361 Pfam Seed dormancy control 165 238 IPR025422 GO:0006351|GO:0043565
Vvi18g0381 361 SUPERFAMILY Leucine zipper domain 77 119 IPR046347 GO:0003700|GO:0006355
Vvi18g0381 361 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0381 Vvi-Chr18 3862154 3867133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0381 1 360 Calmodulin-binding Proteins AT5G10030 66.667 3.72e-177 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi18g0381 DOG1 7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0381 K14431 - vvi:100255706 704.901