Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0380 ATGAGTAATCTGAGAACGATTTGTAGACCTCACATCCACATAGTATTCTTCTCTTCCTTCATATGCTGCAGAAGCCAAGCTGCCAAATCTAGGATTTCTTTTCGAAACCCTAACTCCCAGTCCCGTGTATCCTTGCCTTGTGCGTTCTCTCCTTGGTTTGATTCCAACAGAAATGAGCCGTGGTTTCGTGTGAGTCAGAGGAGAACGCTGGTTAGAGCATCCAAGTGGACCGACGAGAAGTCTCCCTATGAGACTCTTGAGTTGGACAGGGATGCTGATGAAGAAAAAATAAAGTTGGCTTATAGACGCTTGGCCAAATTTTATCATCCAGATGTTTATGATGGTAGGGGGACCCTTGCAGAAGGGGAAACAGCTGAAGCTCGATTCATTAAGATTCAAGCTGCCTATGAGTTGCTCATAGATGATAAGAAGCGGAGGCAATATGATAATGACAACCGAGTTAACCCAATGAAGGGGAAAAAGAAAAAAAGGGGGTTTTCTCACTAG 507 0.4418 MSNLRTICRPHIHIVFFSSFICCRSQAAKSRISFRNPNSQSRVSLPCAFSPWFDSNRNEPWFRVSQRRTLVRASKWTDEKSPYETLELDRDADEEKIKLAYRRLAKFYHPDVYDGRGTLAEGETAEARFIKIQAAYELLIDDKKRRQYDNDNRVNPMKGKKKKRGFSH* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0380 168 PANTHER CO-CHAPERONE PROTEIN DJLA 58 155 - -
Vvi18g0380 168 SUPERFAMILY Chaperone J-domain 21 148 IPR036869 -
Vvi18g0380 168 SMART dnaj_3 80 144 IPR001623 -
Vvi18g0380 168 CDD DnaJ 82 141 IPR001623 -
Vvi18g0380 168 Pfam DnaJ domain 82 149 IPR001623 -
Vvi18g0380 168 ProSitePatterns Nt-dnaJ domain signature. 129 148 IPR018253 -
Vvi18g0380 168 PRINTS DnaJ domain signature 124 144 IPR001623 -
Vvi18g0380 168 PRINTS DnaJ domain signature 83 101 IPR001623 -
Vvi18g0380 168 PRINTS DnaJ domain signature 101 116 IPR001623 -
Vvi18g0380 168 PRINTS DnaJ domain signature 144 163 IPR001623 -
Vvi18g0380 168 Gene3D DnaJ domain 69 166 IPR036869 -
Vvi18g0380 168 ProSiteProfiles dnaJ domain profile. 81 152 IPR001623 -
Vvi18g0380 168 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0380 Vvi-Chr18 3852938 3861025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0380 83 149 C2H2 Transcription Factor Family AT1G74250 40.299 3.05e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0380 - - vvi:100250529 328.946