Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0372 ATGTGTCCCCTCCCGGCGACAGAGCTCCGTCCGCTGGATCCATCCATATGGAGAGCCTGCGCCGGGAAATCCGTTCACATCCCCGCCGTTCATTCTAGGGTTTATTACTTTCCCCAAGGCCACGTCGAACAAGCCTCTTCCCCTCCCGTCCTCTCCCCTCTAGTCTTCTCCAAACCTTCTGTCCTCTGTCGTGTTGTCGCCGTTTGGTTCCTCGCGGATCAAGATACGGATGAGGTCTTTGCCAAGATCAGGCTTGAGCCTGTTGGTCGATCTTGGGAGTCTGGGACTATGGAACGTAGAAGGGTGGGGGATGGTGATGATGACAAGGAAGATGAAGGGGAGGATAAGGTTATGTCGTTTGTCAAGATTCTGACTTCGAGCGACGCCAACAATGGCGGTGGTTTCTCGGTGCCGAGGTTTTGCGCGGACTATATATTTCCGCCCTTGAATTTTCAGGCAGATCCGCCGGTGCAGCATTTGTTGTTCACTGATCTTCGTGGTACGAAGTGGGATTTTCGCCACATTTATCGTGGCACGCCGAGGCGGCATTTGCTCACCACTGGTTGGAGCAAGTTTGTGAATGATAAAAAATTAGTAGCAGGAGATTCGGTGGTATTTATGAAGAGGAATTCGAACAGCGAACTGTTTATTGGGGTGAGGAGGGACGCGAGATGGAACAGGAATGGAGAGAGGTGGAGCTTTCGGAGTGCACTGGCGGGTGCTGTGAAAGCGAAGGAGGTTGGGAGCATAGAGGGGTTCTCAAGGAGCAGCAGTGGTAGGGTTCGGGCGGAGGAAGTGGCGGTGGCTGCAGAATTGGCAGCGCAGGGCATGCCGTTCGAGGTTGTTTACTATCCACGGGTAGGGTCATCTGACTTTGTGGTGAAGGCGGAGGTGGTGGAGGAAGCGCTGAGTGTCTTCTGGACTGGAGGCATGAGGGTCAAAATGGCGATGGAGACTGAGGATTCATCCAAAACTTCATTGTTCCAAGGGACAGTTTCGTCTGCTACGGTTATGGATAATGGGCCTTGGAGGGGCTCCCTCTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCAGAATGTGATGAGAGTGAGTCCTTGGCAAGTTGAATTGGTTATGCCCACACCACCATTTCATACCACACCACCCCCAGCAAAGAGATTCAGAATTGCTCAAAGTCCAGAGCTACCAAGTGATGGAGAGGGAGAAATCTTCTTTCCTATGGCTGATACAGTGATGGGAATCTTGAACCCCTCATTGTTGAATCATAACACTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATTCTTTCTATGTATCCAGTTTATCCAACTTAACAAGCGAAAATACCCATCAGATGTGCACCATCAATTCACTGGATGACATGGCAACAAAGTTGAACACTGTGTCTACTGAGCTGAACATAGGCAGTTCACTGTCTGACAACTTATCACCAGATAGCCAGGGCAGTGTGCATTTCTTTGGTACCAAACCTGTTGGAAATCAGGATGGCAACTCCTCAACAAAAGTTGGTATTCATTCATTTCAGTTGTTTGGCAAGGTCATTCATATAAAGCAGCCTGTTGAAGGTAATTGCAGCGCTGATGGTTGCACAGAAGATGGTAGTAAAAAAATACAATGA 1653 0.4991 MCPLPATELRPLDPSIWRACAGKSVHIPAVHSRVYYFPQGHVEQASSPPVLSPLVFSKPSVLCRVVAVWFLADQDTDEVFAKIRLEPVGRSWESGTMERRRVGDGDDDKEDEGEDKVMSFVKILTSSDANNGGGFSVPRFCADYIFPPLNFQADPPVQHLLFTDLRGTKWDFRHIYRGTPRRHLLTTGWSKFVNDKKLVAGDSVVFMKRNSNSELFIGVRRDARWNRNGERWSFRSALAGAVKAKEVGSIEGFSRSSSGRVRAEEVAVAAELAAQGMPFEVVYYPRVGSSDFVVKAEVVEEALSVFWTGGMRVKMAMETEDSSKTSLFQGTVSSATVMDNGPWRGSLWRMLQVTWDEPEVLQNVMRVSPWQVELVMPTPPFHTTPPPAKRFRIAQSPELPSDGEGEIFFPMADTVMGILNPSLLNHNTFPAGMQGARQDSFYVSSLSNLTSENTHQMCTINSLDDMATKLNTVSTELNIGSSLSDNLSPDSQGSVHFFGTKPVGNQDGNSSTKVGIHSFQLFGKVIHIKQPVEGNCSADGCTEDGSKKIQ* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0372 550 ProSiteProfiles B3 DNA-binding domain profile. 120 223 IPR003340 GO:0003677
Vvi18g0372 550 SUPERFAMILY DNA-binding pseudobarrel domain 115 231 IPR015300 -
Vvi18g0372 550 Gene3D - 117 222 IPR015300 -
Vvi18g0372 550 SMART B3_2 120 222 IPR003340 GO:0003677
Vvi18g0372 550 CDD B3_DNA 119 221 IPR003340 GO:0003677
Vvi18g0372 550 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 534 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi18g0372 550 Pfam Auxin response factor 269 352 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi18g0372 550 Gene3D - 307 378 - -
Vvi18g0372 550 FunFam Auxin response factor 118 223 - -
Vvi18g0372 550 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0372 Vvi-Chr18 3749001 3754629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0372 10 548 B3 DNA Binding Superfamily AT1G77850 50.906 4.09e-170 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi18g0372 B3 2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0372 - - vvi:100255673 1055.43