Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0371 ATGGCTTTGCAGAATATTGGTGCTGGAAACAGGGATGATGCCTTCTATAGGTATAAGATGCCCAAAATGATAACCAAGATTGAAGGTCGAGGGAATGGAATCAAGACTAATGTGGTCAACATGGTTGATATTGCAAAGGCCTTGGCTAGACCTGCATCTTACACAACCAAGTATTTTGGTTGTGAGCTTGGAGCGCAGTCCAAATTTGATGAAAGGACTGGAACTTCCCATGTCAATGGAGCCCATGACACTCCAAAGCTTGCTGGGCTTCTTGAAAACTTTATCAAGAAATATGTTCAGTGCTATGGTTGTGGGAACCCTGAAACTGAAATAGTCATTACCAAGACACAGATGATTACCCTGAAATGTGCTGCATGTGGGTTTGTTTCAGATGTCGATATGAGGGATAAGCTCACAACATTTATCCTCAAGAATCCTCCTGAGCAAAAGAAAACATCAAAAGACAAGAAGGCAATGAGAAGGGCTGAGAAGGAGCGGCTCAAGGAAGGGGAGGCTGCTGATGAGGAGCAGAAGAAGCTGAAAAAAGAGGCTGTGAAGAAAAAGGGCTCTTCAGTTAGTTCCAAGGATGTGACTTCCAAAGTTGCATCAACAAAGAAGACCACCAGTGTATCTGATGAGGATCGTTCCCCAACTGGTAGCCAGGCTGATGAGAATGAAACAGAACCTGCTGATGAAAGTGATGATGATGTCCAATGGAAAACGGACCCATCTGTGGAGGCAGCTCAGCAACGAATCAAGGAACAACTGAGTGCTGTTACCGCTGGGATGGTTATGCTGTCTATGGATGAAGAGAAGGCAAAATCAACAAAGAAGTCCCCGAAACATGAAGAGAAATCTGAGCTCAAGGGAGCCCAAAATGGGACTAAATCAGGTAATAATCAAGAAAGGCTTGTTGATGAAATCAAAGAGTATCTGAAGAAGGGTCCTTCTGCAGTCAAACTCAAGAACTTTTTGGGATCCCTTTCAGGGACTTCCCAAGAAATCATTGATGCCCTGTTTGAAGCTCTATTTATGGGCATTGGGAAGGGGCTTGCTAAAGAGGTGGCCAAAAAGAAAACCTACCTGGCAGCAGTCACCCAGGAAGATCGTTCGCAGTCCATTCTGCTGCGTGCTATTGAGTCCTTTTGTGGGAAATCAAATCCTGAGGCAGTAAAAGAGGTGGGCTTGGTTCTGAAAGCGCTGTATGACAATGATTTGCTGGAGGAAGAGTTCATACTAGAGTGGTATAAGCAGGGCTTGGCTGGTGGGAATAAGAACTCTAAGATCTGGAAGAATGTCAAGCCTTTCATTGAATGGCTCCAGAGTGCCGAGTCTGAATCAGAAGAGGAGTGA 1353 0.4479 MALQNIGAGNRDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDERTGTSHVNGAHDTPKLAGLLENFIKKYVQCYGCGNPETEIVITKTQMITLKCAACGFVSDVDMRDKLTTFILKNPPEQKKTSKDKKAMRRAEKERLKEGEAADEEQKKLKKEAVKKKGSSVSSKDVTSKVASTKKTTSVSDEDRSPTGSQADENETEPADESDDDVQWKTDPSVEAAQQRIKEQLSAVTAGMVMLSMDEEKAKSTKKSPKHEEKSELKGAQNGTKSGNNQERLVDEIKEYLKKGPSAVKLKNFLGSLSGTSQEIIDALFEALFMGIGKGLAKEVAKKKTYLAAVTQEDRSQSILLRAIESFCGKSNPEAVKEVGLVLKALYDNDLLEEEFILEWYKQGLAGGNKNSKIWKNVKPFIEWLQSAESESEEE* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0371 450 MobiDBLite consensus disorder prediction 144 238 - -
Vvi18g0371 450 ProSiteProfiles W2 domain profile. 290 450 IPR003307 GO:0005515
Vvi18g0371 450 MobiDBLite consensus disorder prediction 148 190 - -
Vvi18g0371 450 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Vvi18g0371 450 SUPERFAMILY ARM repeat 298 444 IPR016024 -
Vvi18g0371 450 Gene3D - 295 441 - -
Vvi18g0371 450 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Vvi18g0371 450 Pfam eIF4-gamma/eIF5/eIF2-epsilon 372 450 IPR003307 GO:0005515
Vvi18g0371 450 SMART 542_3 359 446 IPR003307 GO:0005515
Vvi18g0371 450 Coils Coil 159 179 - -
Vvi18g0371 450 CDD W2_eIF5 299 443 - -
Vvi18g0371 450 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 449 IPR045196 GO:0003743|GO:0006413
Vvi18g0371 450 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Vvi18g0371 450 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Vvi18g0371 450 MobiDBLite consensus disorder prediction 191 206 - -
Vvi18g0371 450 Gene3D - 3 104 - -
Vvi18g0371 450 Gene3D - 105 145 - -
Vvi18g0371 450 MobiDBLite consensus disorder prediction 270 290 - -
Vvi18g0371 450 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Vvi18g0371 450 MobiDBLite consensus disorder prediction 269 301 - -
Vvi18g0371 450 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Vvi18g0371 450 MobiDBLite consensus disorder prediction 207 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0371 Vvi-Chr18 3743822 3745174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0371 1 443 Eukaryotic Initiation Factors Gene Family AT1G77840 64.811 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0371 K03262 - vvi:100262554 837.025