Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0366 ATGACCGGAGGCCGATGTCACCGGCAGAAGAAGATGATGGGTAGGGGTGCGGAAAGAGGCTGCGGCACCGAGGAGAAGCCGTGTCCCATTTCTAGGGCTCCAGCGAAAATTTCGGCGAAACAGCCGGGGAATCCAGGAAAAGAGGTATCATTGGGCGTCGATTTATATGCCCAAGCCCGGAAAGCACTGTCTGATCGCTGCCCATTCGAGACAGAGGAGGCTTTAGCAAATACTGTTTCCACACTTCCGAGTGGATTGGCCTGTTTATTGTCTAAACATTCTGATAGTAGAAAGAGACACAAGAAGTCTCATTCTGACACAAAATCTTCATCCCGGCAGTCTCGTGGTGCGAATATTTGGTTGGAGACAGAGGGGTACTTCAGAGAATTGGCATTTCCGGATATTGAAACCCTGGTTGAGGTATCTTCTTCTGTTTCTTTAGCTACCGAGAAGAATTTTTTGATTCCATATATAGGAAACCCTATCGAGGCTAATGGGGTTTCAAGTGAACTTCAGAATGGTGAGAATGCAAATGGTAATGGCATTGTTGTTAAAGAAGAGGACAAGAAAGAGGACAATCAGTTAATGGAAATTGACAGTGTGGAAACTGAAGTTTTGCCCCCGGAAGAAAAGGCTTGTTCTCAGTCCCCTCTATCTAGTGGTCTGGAGTGGCTTTTAGGTTTGAAGAATAAAGTTCTTCTGACCTCAGAACGTCCTAATAAGAAAAGAAAACTTTTGGGTAGTGATGCGGGGTTAGAGAAACTTATAATCGCTCGACCATGTGAAGGGAATTCTTCTTTGTGCCACTTTTGCTGCACAGGGGACATGGGAGAACAATCAAACCGATTGATTGTTTGCCGTTGTTGTAATGTTGCTGTGCACCAAAAGTGTTATGGTGTGCAAGAGGACATAGATGAAGAATCGTGGTTGTGTACTTGGTGTTGGCATAAGAATGATAAGAACGATGCCAGTAACGGTGAATCAGTGAAGCCTTGTGTGCTTTGCCCAAAGCAGGGTGGTGCTTTAAAACCTCTTCATAAGAGTGAAGATGAGGAGTCTATGGAGTTTTCTCATCTGTTTTGTAGCCAGTGGATGCCTGAGGTTTATGTGGAGGACACAAGGAAGATGGAGCCTATTATGAATATTGATGGAATAAAGGAAACTCGGAAAAAGTTGGTATGCAATGTGTGTAAGGTGAAATATGGTGCTTGTGTTCGATGCAGTAATGGAGCTTGCAGAACTTCTTTCCATCCCATATGTGCAAGGGAAGCAAGACACAGAATGGAGATTTGGGGAAAATTTGGTTGTGATAATCTTGAGCTACGGGCCTTTTGTTTAAAGCATTCAGAAGTCCAGGATGTTAGCAGCACCCAACAGTTAGGAGATTTTTCTGCAGCTGATGGCAGCAACACTTCAAGTCACCCACCAGTGACATCAGTTAACAAACCACAAAAGTTAAAGATTGGTCTCAGAAATGGTGATAAAATTGCTGTTCATATGGAAACACCTGATAACAATTCCAATAAATTGAGTGATGGTGAATTTCAAGAAACAGGATTGCCAAATACCAGATCAAAGGCTGAACTTATGTCAGGATGTGCTGATGCACAGCAACTCATTGGTATGCGTATGCTAGAGACGATTAACAGTGAAGGTGTTAATCCATCTGACTCGATAAATCTTGCACTGATTCTAAAGAAGGATGATCACTTGGTCCCTGACTTGCAATGCAAAATACTGAAATGGCTTAAGGATCATGCTTACATGGGTACCTTGCAAAAAAATTTGAAAGTCAAAATAAAATCTGCAATTTCATCAAAGGATGAAATTGGAGAAGTTGATGGTTCTAATGCTGTGCTTGTCTCTGAGACTGATATTCCAGAACCAGTTCCTGTGAAGTCAGTTCCCCCACGGAGAAGAACCAAAAGCAACATTAGAATTTTGAAGGATAACAGATTAATATGCTCATCTGAAGAAACATTTAGTGACAATGGAACAGTAATGGATGAAGTTAACACAGATCAACTTGCTGGTGAACTTGAAAATTCAAGCAAAGGATCTTTTCCTAGTGCCACTGAAAAGCCTTTTACCAAGCCTGTTGGGTTTCAAGATTCTTTGGAAAGGCATTCACCTAAATTTGAAAGTAGTGAACCTTCAAACTGCAGTCTTTCTGATAGTGGCCGAATTGAGGAGGATTGTGGTGAGGATAATACTTTGGTGAATTTAAACAAGGAAAATCCTGTTTGTTCAGTTGTGGATCCAGTTCCTCCTGATCTGATAAACACAAAAACAGTATCTGGTTCTTACATTCACCCACTTATTTACCAGAAGCTGAGGCAAACACAGAGTGGGTTGCTTTTAAAGAACACAATTTGTTCAAGGGGCCCAGAAATTTCTCCTATGGAAACATCTTCTTATGTCAGAGTTCCTTGCAATCACCAAAGTCAACATTCAACATGCACTGAAATGATTTGTAAATCTGAGGGAGAAAATTTAGAGCAGTTGGTTAAGGCTAGGAATACAGGGGTTTTAGAACTTTCTCCTGAAGACGAAGTTGTAGGGGAACTTATTTATTTTCAGAATAGGCTTCTTGGCAATGCCGTTGCAAGAAAGAACCTTAGTGATGATTTAATTTGTAAGGTTGTGAAGAGTCTACCTCAGGAGATTGAAGTGGTGCGGAAGCAAAAATGGGACTCTGTGCTTGTTAACCAGTATCTTTGTGAGCTTAAAGAAGCAAAGAAGCAGGGAAGGAAAGAAAGGAGGCACAAAGAAGCACAGGCTGTGCTTGCTGCTGCAACTGCTGCTGCTGCAGCTTCCTCTAGGATTTCATCGTTTAGGAAAGATGCCATTGATGAATCTGCTCATCAGGAGAATCTGTTGAAGGTAAACACTTCTAGTGGACGGGCTGGGCTTTCCTCTCAGCCAATGCCACGAGCAAAGGAGACACTCTCAAGGGTTGCTGCGCCAAGGGTTTCATCAGAAAAGTTTTCTGATTTTGTCCAATCTAACTTAGATTTTTCTAAAGAGCATGGTAGATCGTGTGACATTTGCAGACGCTCTGAGACAATTTTGAATCCAATTTTAGTCTGTTCCAGTTGCAAGGTGGCTGTTCACTTGGATTGCTATCGTAGTGTTACAGATTCTCCAGGTCCATGGTATTGTGAACTATGTGAAGAATTAGTGTCATCTAAAGGCTCTAGAGCTCCAGCTGTCAATTTCTGGGAGAAGCCTGCCTTTGCTGTAGAATGTGGTCTTTGTGGTGGCAATGCTGGTGCTTTTAGAAAGACAACTGATGATCAATGGGTTCATGCTTTCTGCGCTGAGTGGGTGCTTGAATCAACATTCAGAAAGGGACAAGTAAATCCTGTTGAAGGAATGGAGACAGTTTCAAAGGGGAGTGATGTTTGTTATATCTGTCATCGCAAAAATGGTGTCTGCATAAAGTGTAACTATGGTCACTGTCAGAGCACTTTTCATGCTTCTTGTGCTCGAAGTGCTGGTTTATACATGAATGTGAAGACTGGTGCTGGCAAGCTGCAGCACAAAGCATATTGTGAAAAACATAGCTTGGAACAGAGGGCAAAGGCCGAGACACAAAAAGCTGGAATTGAAGAGTTAAAGAACATTAAACAAATTAGGGTTGAACTGGAGAGGTTACGCCTTCTTTGTGAGAGAATTATCAAACGAGAAAAATTGAAGCGGGAATTGATACTTTGTTCACATGACATACTTGCTTCAAAAAGAGACTCTGTTGCTTTGTCTGTGCTTGTCCATAGCCCCTTCTTCCCTCCTGATGTTAGTTCAGAATCAGCTACAACATCTCTTAAAGGGCATATGGATGGCTACAAATCAAGTAGTGAAGCTATCCAGAGATCAGATGACATAACAGTGGACAGCACAATTTCTGGTAAGCACTGTATTAAGCTTCCTGTCTCCATGGACAGTGACCAAAAGACAGATGACAGCTCCACATCCCAGCACCTTTGTACAAGAAAGCCTTCAGAGGGGGCTTCATTTTGTGGGAAGCAAATCCCTCTTAGACCTTCATCTGTTGCATCTCGGAATGTTTCGGGTGAGGTTGAGAAAAGATCAAAATCCAGAAAGCACACTGAAACATTTGAAAAGGAGCTGGTAATGACATCAGATCAAGCATCTGTGAAGAATCAACGATTACCTAAAGGATTTGTTTATGTTCCTATTGGTTGCCTTTCGAAGGAGAAACAGATCAACCAGGATGCATGTCCTCGTGAATCAGTGGAACGTGATGGGTAG 4272 0.4223 MTGGRCHRQKKMMGRGAERGCGTEEKPCPISRAPAKISAKQPGNPGKEVSLGVDLYAQARKALSDRCPFETEEALANTVSTLPSGLACLLSKHSDSRKRHKKSHSDTKSSSRQSRGANIWLETEGYFRELAFPDIETLVEVSSSVSLATEKNFLIPYIGNPIEANGVSSELQNGENANGNGIVVKEEDKKEDNQLMEIDSVETEVLPPEEKACSQSPLSSGLEWLLGLKNKVLLTSERPNKKRKLLGSDAGLEKLIIARPCEGNSSLCHFCCTGDMGEQSNRLIVCRCCNVAVHQKCYGVQEDIDEESWLCTWCWHKNDKNDASNGESVKPCVLCPKQGGALKPLHKSEDEESMEFSHLFCSQWMPEVYVEDTRKMEPIMNIDGIKETRKKLVCNVCKVKYGACVRCSNGACRTSFHPICAREARHRMEIWGKFGCDNLELRAFCLKHSEVQDVSSTQQLGDFSAADGSNTSSHPPVTSVNKPQKLKIGLRNGDKIAVHMETPDNNSNKLSDGEFQETGLPNTRSKAELMSGCADAQQLIGMRMLETINSEGVNPSDSINLALILKKDDHLVPDLQCKILKWLKDHAYMGTLQKNLKVKIKSAISSKDEIGEVDGSNAVLVSETDIPEPVPVKSVPPRRRTKSNIRILKDNRLICSSEETFSDNGTVMDEVNTDQLAGELENSSKGSFPSATEKPFTKPVGFQDSLERHSPKFESSEPSNCSLSDSGRIEEDCGEDNTLVNLNKENPVCSVVDPVPPDLINTKTVSGSYIHPLIYQKLRQTQSGLLLKNTICSRGPEISPMETSSYVRVPCNHQSQHSTCTEMICKSEGENLEQLVKARNTGVLELSPEDEVVGELIYFQNRLLGNAVARKNLSDDLICKVVKSLPQEIEVVRKQKWDSVLVNQYLCELKEAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDAIDESAHQENLLKVNTSSGRAGLSSQPMPRAKETLSRVAAPRVSSEKFSDFVQSNLDFSKEHGRSCDICRRSETILNPILVCSSCKVAVHLDCYRSVTDSPGPWYCELCEELVSSKGSRAPAVNFWEKPAFAVECGLCGGNAGAFRKTTDDQWVHAFCAEWVLESTFRKGQVNPVEGMETVSKGSDVCYICHRKNGVCIKCNYGHCQSTFHASCARSAGLYMNVKTGAGKLQHKAYCEKHSLEQRAKAETQKAGIEELKNIKQIRVELERLRLLCERIIKREKLKRELILCSHDILASKRDSVALSVLVHSPFFPPDVSSESATTSLKGHMDGYKSSSEAIQRSDDITVDSTISGKHCIKLPVSMDSDQKTDDSSTSQHLCTRKPSEGASFCGKQIPLRPSSVASRNVSGEVEKRSKSRKHTETFEKELVMTSDQASVKNQRLPKGFVYVPIGCLSKEKQINQDACPRESVERDG* 1424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0366 1423 MobiDBLite consensus disorder prediction 462 480 - -
Vvi18g0366 1423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 327 IPR013083 -
Vvi18g0366 1423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 993 1067 IPR013083 -
Vvi18g0366 1423 MobiDBLite consensus disorder prediction 462 485 - -
Vvi18g0366 1423 SUPERFAMILY FYVE/PHD zinc finger 1007 1060 IPR011011 -
Vvi18g0366 1423 ProSiteProfiles Extended PHD (ePHD) domain profile. 1080 1189 IPR034732 -
Vvi18g0366 1423 ProSiteProfiles Zinc finger PHD-type profile. 265 317 IPR019787 -
Vvi18g0366 1423 Pfam PHD-zinc-finger like domain 1082 1188 - -
Vvi18g0366 1423 Pfam PHD-zinc-finger like domain 331 448 - -
Vvi18g0366 1423 MobiDBLite consensus disorder prediction 679 728 - -
Vvi18g0366 1423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 451 IPR013083 -
Vvi18g0366 1423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1078 1190 IPR013083 -
Vvi18g0366 1423 SMART PHD_3 1135 1189 IPR001965 -
Vvi18g0366 1423 SMART PHD_3 267 315 IPR001965 -
Vvi18g0366 1423 SMART PHD_3 1013 1058 IPR001965 -
Vvi18g0366 1423 SMART PHD_3 393 449 IPR001965 -
Vvi18g0366 1423 PANTHER PHD FINGER PROTEINS 38 949 - -
Vvi18g0366 1423 Coils Coil 1209 1229 - -
Vvi18g0366 1423 ProSitePatterns Zinc finger PHD-type signature. 1014 1057 IPR019786 -
Vvi18g0366 1423 MobiDBLite consensus disorder prediction 1 47 - -
Vvi18g0366 1423 SUPERFAMILY FYVE/PHD zinc finger 258 316 IPR011011 -
Vvi18g0366 1423 MobiDBLite consensus disorder prediction 1316 1332 - -
Vvi18g0366 1423 ProSitePatterns Zinc finger PHD-type signature. 268 314 IPR019786 -
Vvi18g0366 1423 MobiDBLite consensus disorder prediction 499 520 - -
Vvi18g0366 1423 Pfam PHD-finger 281 314 - -
Vvi18g0366 1423 Pfam PHD-finger 1025 1058 - -
Vvi18g0366 1423 ProSiteProfiles Extended PHD (ePHD) domain profile. 329 449 IPR034732 -
Vvi18g0366 1423 MobiDBLite consensus disorder prediction 1358 1372 - -
Vvi18g0366 1423 ProSiteProfiles Zinc finger PHD-type profile. 1011 1060 IPR019787 -
Vvi18g0366 1423 MobiDBLite consensus disorder prediction 501 520 - -
Vvi18g0366 1423 CDD ePHD 1083 1188 - -
Vvi18g0366 1423 MobiDBLite consensus disorder prediction 93 115 - -
Vvi18g0366 1423 MobiDBLite consensus disorder prediction 1312 1372 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0366 267 421 C2H2 Transcription Factor Family AT3G14740 31.847 1.02e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi18g0366 zf-HC5HC2H_2 2e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0366 - - vvi:100245365 2748.38