Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0363 ATGCATCACCTGCCTCGACTCTTCGATTATAGCAAGAGATCCAAAGGGATGTTTCCAAAGCAGAAGCCACGGAAGCCCAAGCTCGAGCGTCGCAATGCCTTGAGGCACATCGACTACGACGCCTCCGCTTCGTCGTCGTCGTCGTCGTTCGATGACTCCTTGGCTCTCCATACTCAATCGTTGGATCTGTCGGACCGAAGCAGCTTCCGAATTCATGGAACAGAAGGGGAAGTTGACGAGATTTGCCGGAGTTTAGGGCTTTCGGGACCGGACGAATTATCGATTCCGGAGGCGGCGTGGGAGGCGTGGAAGGTTCGATCGAATTCGGATGTTTTGCCGAGGACGAGATTTAACAGATTGCATAGTTCCAAGAGAAAGGAATCGGAAGTGAAGGTGGATGATGGGGTGGTAGATGATTTGGCAGATGGGTTTGAGGATAGTGTTAGCTGTAGTGATGCAATCGGGAGACGGAGAGAGACTTCCGAGCTGAGTAGTTCTAGGATTGTTGGTGGTGTTGGCGGCTGTGGCGGAGGAATTAAGGGTGTTAGGCCTCCTTTTCTTTCACCGCCGCCTTTAATGTCGCTTCCTGTGATTAGTGACGGGTGTTCCACTTGGGATATTTTGAAATCTTTTGGGCCGGATGCTGATGGGGGTTCTTCTGTTGTGGTAGAAGGAGGGTCTAGTTCCGAGGACGACGAATTTGATGCGGCACTTGTTAAGGGAGAGGACGTGAATGGGTTGAGGAACGACGAGATTGCTCTTCTATCCGAGTCATATTCATTTACCACGACGTCCAATGATGATGACTCCTCAAGCACTACCACGGAGCCCATGTCAAACATCTCGCCAAATGGCAGCTTGAGACCCAGTTTCACAAATTGGATGAAGGGTGCGTTTCTGGGAAGTGGATCCTTTGGAACGGTGTATGAAGGGATGTCCGAGGATGGAATATTTTTTGCTGTAAAGGAAGTTTCATTGCTTGATCAAGGAAGCCAGGGCAAGCAAAGTCTTTACCAACTTGAGCAGGAAATTGATCTTTTAAGTCAATTTCAACATGAGAACATAGTTCAATATCATGGCACAGCTAAGGATGAATCAAAGCTCTATATCTTTCTTGAACTTGTAACTAAAGGATCACTTGCAAGTCTCTATCAGAGATATAATCTTGGAGATTCCCAAGCCTCAGCATACACAAGACAAATTCTGCATGGTTTGAATTATCTTCATGAGCGAAATGTGATTCACAGGGACATCAAATGTGCAAACATATTGGTGGGTGCCAATGGGTCTGTGAAACTTTCAGATTTTGGGTTGGCAAAGGTTATTTTTTTGAGTAAAAAAATTATGATTTTTCTAGTAGTTTCTGAAATATTCTTAATGTCATTTTTTAATATTTCTTCATATTCTTTTGCAGGCAACCCAATTGAATGA 1431 0.4542 MHHLPRLFDYSKRSKGMFPKQKPRKPKLERRNALRHIDYDASASSSSSSFDDSLALHTQSLDLSDRSSFRIHGTEGEVDEICRSLGLSGPDELSIPEAAWEAWKVRSNSDVLPRTRFNRLHSSKRKESEVKVDDGVVDDLADGFEDSVSCSDAIGRRRETSELSSSRIVGGVGGCGGGIKGVRPPFLSPPPLMSLPVISDGCSTWDILKSFGPDADGGSSVVVEGGSSSEDDEFDAALVKGEDVNGLRNDEIALLSESYSFTTTSNDDDSSSTTTEPMSNISPNGSLRPSFTNWMKGAFLGSGSFGTVYEGMSEDGIFFAVKEVSLLDQGSQGKQSLYQLEQEIDLLSQFQHENIVQYHGTAKDESKLYIFLELVTKGSLASLYQRYNLGDSQASAYTRQILHGLNYLHERNVIHRDIKCANILVGANGSVKLSDFGLAKVIFLSKKIMIFLVVSEIFLMSFFNISSYSFAGNPIE* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0363 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Vvi18g0363 476 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Vvi18g0363 476 SUPERFAMILY Protein kinase-like (PK-like) 268 447 IPR011009 -
Vvi18g0363 476 Gene3D Transferase(Phosphotransferase) domain 1 378 467 - -
Vvi18g0363 476 MobiDBLite consensus disorder prediction 13 51 - -
Vvi18g0363 476 Pfam Protein kinase domain 297 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0363 476 MobiDBLite consensus disorder prediction 262 286 - -
Vvi18g0363 476 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 67 442 - -
Vvi18g0363 476 Gene3D Phosphorylase Kinase; domain 1 282 375 - -
Vvi18g0363 476 ProSiteProfiles Protein kinase domain profile. 294 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0363 476 SMART serkin_6 294 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0363 Vvi-Chr18 3602838 3606329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0363 6 441 MAP Kinase Kinase Kinase AT4G08500 45.791 1.70e-100 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi18g0363 Pkinase 3.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0363 K13414 - vvi:100264291 789.26