Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0356 ATGGCTCAAGCGCTTGCGACGCCTCTCGCACCCTCGCTCTCCCTCATTTGCAACACAAGGAATCCTCTCTCTCCTTCTAACAATCTCTCCTTCTCCACCCCTGCACCTCCTAAGTTTGGTGGTCTGAGTATCAAATGCGCCCGTGTTGGAGGTGTGGAGATTCCCAATAGCAAGCGAGTGGAGTACTCTCTTCAGTACATCCATGGGATCGGCCGGAGCCGATCTAAGCAAATCCTCTGTGACCTAGGCATGGAAAACAAAATCACCAAAGACCTGTCCGAAGAAGAACTCATCACTCTTCGTGACGAAGTTTCCAAGTATATGATTGAAGGCGACCTCAGGCGATTCAATGCGCTGGCTATAAGGAGACTGAAGGAGATACAGTGCTACAGAGGGATAAGGCATATACAGGGCCTGCCCTGCCGAGGACAGCGCACCAAGAACAATTGCCGGACTTTGAAGGGTAAGCGAGTGAGCATTGCAGGAAAGAAGAAGGCCCGTTAA 504 0.5119 MAQALATPLAPSLSLICNTRNPLSPSNNLSFSTPAPPKFGGLSIKCARVGGVEIPNSKRVEYSLQYIHGIGRSRSKQILCDLGMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKRVSIAGKKKAR* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0356 167 SUPERFAMILY S13-like H2TH domain 47 158 IPR010979 GO:0003676
Vvi18g0356 167 ProSiteProfiles Ribosomal protein S13 family profile. 49 155 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi18g0356 167 NCBIfam 30S ribosomal protein S13 48 157 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi18g0356 167 ProSitePatterns Ribosomal protein S13 signature. 131 144 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi18g0356 167 Gene3D 30s ribosomal protein s13, domain 2 116 167 IPR027437 -
Vvi18g0356 167 FunFam 30S ribosomal protein S13 45 115 - -
Vvi18g0356 167 Pfam Ribosomal protein S13/S18 48 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi18g0356 167 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 42 164 - -
Vvi18g0356 167 Gene3D - 47 115 - -
Vvi18g0356 167 Hamap 30S ribosomal protein S13 [rpsM]. 46 162 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0356 48 164 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 31.469 1.80e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0356 K02952 - vvi:100254016 320.472