Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0351 ATGGAGGATTTGCAAGCTGATCTCTCAGCTAATGGTTTAACCGTTTCCACCACCCCAGAGAAAGGTCGATGTCTCTTATCGATCAAAGATTTCTCTCCAGGAGAGGTGATCATAAGCCAAGAGCCTTATGTCTCTGTGCCAAACAACTCTGCAGTTCACTCAAGATGTGAGGGATGTTTCAGATCAAGCAATCTTAAAAAGTGCTCGGCTTGTCATGTTGTGTGGTACTGTGGGAGCACATGCCAGAAGTCAGACTGGAAGTTGCACCGTCTTGAATGCAATGCATTGTCAAGGCTTGAGAAGGAAAGGCAAAAATCTCTTACACCTTCTATACGCCTGATGGTAAAGCTCTACATGCGGAGAAAATTGCAAAGTGAGAAGATCATGCCAACTACTGCTAGAGACAACTACAACTTGGTGGAGGCTTTGGTGTCCCACATAACTGACATTGATGAGAAGCAATTGGTGCTCTATGCACAAATGGCTAACCTTGTCAACCTGATACTTCAGTGGCCTGATATTAACGTAAAAGAAATTGCAGAAAACTTTTCTAAGCTTGCATGCAATGCTCATACCATTTGTGATGGTGAACTAAGACCGCTTGGTACTGGACTATATCCTGTCATTTCAATTATTAACCACAGCTGCTTGCCCAACTCTGTTTTGGTATTTGAGGAAAGGTTAGCAGTGGTCCGTGCTGTGCAACATATTCCCAAAGGTACTGAGGTATTAATAAGCTACATAGAAACTGCTGGAAGCACTATAACCCGACAAAAGGCTCTTAAAGAACAATACCTTTTCACTTGCACGTGTCCTCGCTGTAGAAGAATGGGCCAGTATGATGATATCCAAGAAAGTGCAATTCTGGAAGGGTACAGATGCAAGGATGATAGATGTGATGGTTTTTTGCTTCGTGATTCTGATGACATAGGCTTTATATGTCAACAATGTGGTCTTGTTAGGAACAAAGAGGAGATAAAAAGGCTTGCAAGCGAACTAAAACCACTGTCAGATAAGGCTACTATGTCTTCATCTTCCCATTATGTAGAAGCTACTTCAATCTATAAGATGATTGAGAAGCTTCAAACAAAATTGTTTCATCCTTTTTCGATCAATTTGATGCGAACCCGTGAAGCTATTTTGAAGATTTTGATGGAGATGAAAGATTGGAGAGCAGCATTAACATATTGCAAATTAACCATTCCAGTGTATCAAAGAGTTTATCCAGGATTCCACCCTTTGCTTGGGCTGCAATATTATACGTGCGGGAAACTTGAATGGTTACTTGGGGAAACAGAGGATGCTGTCAAATCGCTCACTAAGGCAGCAGATATACTGCAAATTACTCATGGTACAAATACACCCTTTATGAAGGAGCTCCTGTTCAAGTTGGAGGAAGCACGTGCTGAAGCATCTCACAAACGATCATCTAAAGACAAGTAG 1443 0.4165 MEDLQADLSANGLTVSTTPEKGRCLLSIKDFSPGEVIISQEPYVSVPNNSAVHSRCEGCFRSSNLKKCSACHVVWYCGSTCQKSDWKLHRLECNALSRLEKERQKSLTPSIRLMVKLYMRRKLQSEKIMPTTARDNYNLVEALVSHITDIDEKQLVLYAQMANLVNLILQWPDINVKEIAENFSKLACNAHTICDGELRPLGTGLYPVISIINHSCLPNSVLVFEERLAVVRAVQHIPKGTEVLISYIETAGSTITRQKALKEQYLFTCTCPRCRRMGQYDDIQESAILEGYRCKDDRCDGFLLRDSDDIGFICQQCGLVRNKEEIKRLASELKPLSDKATMSSSSHYVEATSIYKMIEKLQTKLFHPFSINLMRTREAILKILMEMKDWRAALTYCKLTIPVYQRVYPGFHPLLGLQYYTCGKLEWLLGETEDAVKSLTKAADILQITHGTNTPFMKELLFKLEEARAEASHKRSSKDK* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0351 480 SMART set_7 11 254 IPR001214 GO:0005515
Vvi18g0351 480 SUPERFAMILY TPR-like 348 445 IPR011990 GO:0005515
Vvi18g0351 480 SUPERFAMILY SET domain 13 247 IPR046341 -
Vvi18g0351 480 Gene3D - 106 190 - -
Vvi18g0351 480 Gene3D Tetratricopeptide repeat domain 400 479 IPR011990 GO:0005515
Vvi18g0351 480 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 14 466 - -
Vvi18g0351 480 Gene3D - 55 105 - -
Vvi18g0351 480 ProSiteProfiles Zinc finger MYND-type profile. 56 93 IPR002893 -
Vvi18g0351 480 Gene3D SET domain 24 274 IPR046341 -
Vvi18g0351 480 ProSiteProfiles SET domain profile. 11 248 IPR001214 GO:0005515
Vvi18g0351 480 Pfam MYND finger 56 93 IPR002893 -
Vvi18g0351 480 Pfam SET domain 22 247 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi18g0351 SET 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0351 K11426 - vvi:100267791 970.689