LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g0349	ATGGACGGGGAGGCTAACCTTCCGGCCCCATCTGCGTCTGCCAATAATCTCAGCCGTCCGATCCTGCCTGACTCCTATCAGAACCGTTCGATCACCTCGTCGTCATCGTCATCATCATCGTCATCATCGTTCTATTCATCTTCTCCGCCGGACTTTCTCCGGCATGTCCAGGCTGCCTTCAAGCGCCACCGTCCACTCGGTACAATGCAGTCTAATAGTATTATGCCAAGGCGTATATTGGTTCCCCGGCGAGAAACCTCAAAGATCACTGCATCAAATGTGGTTCCCACAATAGATGCCAAAAAATCTCAGGATGTGCGTCCTTCAATGCATCAGGGTAACACAGGGAAAGAGTTGGTTGTGGAGATAAGGAACAAGGTATCTGTTGTTGGGGAAACTGAAGAAGATGCACCAATTACTCCACCTTCAATTTCAGGCAGTATCACTAATGAAGATCTATATGATGTGCAACGAGTGCAATGCAAACCCGTTGCTGGATGCAAAAATACTGATGGGGTTTCATTTTCACATGTAGAATCTCAGCATGTTCCAGTTGTTGATGGTCAGAAGAAGGTCCAGTTTTTGTTGGGGAAAAATGCTAGCTCACAGGGGGCCGATGATCGAATGGCCACTGGAACAGACGACCTATCATCTCATATGAGTTCACTTGCATTGACAGAAATGGAATGGGATGTGAGCAATCAAGTAGAGGCACCAACTGATGTCAATCATGACTTGAAGCATGGGTATTTTCAGAACCTGGAATCAGATGTTACTTCGAGGTCTGATGGTGGGATTTCTTCTTTATTGGCAAAGAAACCTGTACTTGCTCAGGATCAGCTGCACCGATTCAGAAACTTCTTGCAGAGTGACATAAACCACCCCATGACTCAAGCTTCAGTGGCTGGATCATCATGTGCTACTACAATATCTGTTCATGCAACTTCTGCACCAGTGATCAATTCAACAACCTACTGCTCCTCTTCACATCAAGATATTAGTCCTCACCTGGCAGTAGAAACTCTGGGAGATGTTAATCTTAATTCTCAACCTATAAGTAAAGGAGATGTTATGCAGCCATCGCATCCTCCATCTAAGTCCACCAGTGGAGTCATAGTTGACCGCACAGCAATTGCAGCCCAAGCTTCATCTTCTTCCATAGATACCCAGTCGAAAGTTAAGGAATATGGCTTTAGTGAGCAACAAGACAGAGTGCCAAATGAAAGGGACATTCCAAAGAATCCTTCTCCTCTTGATGATAATTCAACTAAAGGAAAAGGATTCACTGGTGATGTTACTGATTTACAATCTCAGGTGCCCTTATCCAAAAGTTCATCATCAGATGTGAAATTGGAGACCTCTAAATCTGAAAAACAAGAAAAGGTTGTAAGTGGTAAAGGGTCATCAGTGCCTCGCAAAAAGAATTATGATCCTGACATGTTTTTGAAAGTTAATGGTAAGCTCTATCAAAGGCTTGGTAAGATAGGTAGTGGAGGAAGCAGTGAAGTCCACAAAGTTATATCATCAGATTGTTCTATCTATGCCCTTAAAAAAATCAGGCTTAAAGGTCGTGATTATGCTACTGCATATGGGTTCTGTCAAGAGATTCAATATTTAAACAAGTTGAAAGGGAAGAGCAACATCATACAACTTATTGACTATGAGGTGACAGATAAGACATTGCTCCAAGAAGTCATGAATGGCTCCATGAGTAATAAAGATAGCAGAGTCAAGGATGATGGATGCATATACATGGTGCTTGAATATGGGGAAATTGATTTGGCTAACATGCTGTCCCAGAAATGGAAGGAAATGGATAGCTCTGATCGGACCATAGATGAGAATTGGCTTCGATTTTACTGGCAGCAAATACTTCAAGCTGTCAATACCATACATGAAGAGCGTATAGTGCATTCAGACTTGAAGCCAGCGAATTTTCTTCTTGTCAAAGGTTCCTTGAAGCTGATCGATTTTGGAATTGCTAAAGCTATAATGAGTGATACAACCAACATTCAAAGGGATTCACAGGTGGGTACACTGAGCTACATGTCTCCTGAAGCATTCATGTGCAATGAGAGTGATGCCAATGGAAACACTATAAAGTGTGGTCGGCCATCAGATATCTGGTCACTTGGTTGCATCCTTTACCAAATGGTGTATGGAAGAACCCCCTTTTCAGAATTCAAGACATTCTGGGCCAAGTTCAAAGTCATTACAGATCGTAACCATGAAATAAAGTATGAGCCAGTCTCAAACCCATGGCTTCTTGATATTATGAAGAAGTGTCTTGCATGGGACCGTAATGAGAGGTGGAGGATTCCTGAGCTACTTCAACACCCTTTTCTTGTTCCCCCAGTCCCAGTCCTAGCCCAGTTATCATCCTCTCAAGACCAAAGCTGTAAACTGCTTCAACTGATTACTGAAGCTTGTGCCAATGACCCGAAGGCTTTGATTTTATGTCGTCAACTTCAACAACTACTAAGGGACCCAGTCACGGTGCCAACATCTCAAGTACTAACATCACGAGACCAACAGTGTAAGTTGCTCTCCTATGTGTCAAAGCTTTGCTGTCAACTTCAGGAATATTTATCAGACCCCGATACGTAA	2607	0.4308	MDGEANLPAPSASANNLSRPILPDSYQNRSITSSSSSSSSSSSFYSSSPPDFLRHVQAAFKRHRPLGTMQSNSIMPRRILVPRRETSKITASNVVPTIDAKKSQDVRPSMHQGNTGKELVVEIRNKVSVVGETEEDAPITPPSISGSITNEDLYDVQRVQCKPVAGCKNTDGVSFSHVESQHVPVVDGQKKVQFLLGKNASSQGADDRMATGTDDLSSHMSSLALTEMEWDVSNQVEAPTDVNHDLKHGYFQNLESDVTSRSDGGISSLLAKKPVLAQDQLHRFRNFLQSDINHPMTQASVAGSSCATTISVHATSAPVINSTTYCSSSHQDISPHLAVETLGDVNLNSQPISKGDVMQPSHPPSKSTSGVIVDRTAIAAQASSSSIDTQSKVKEYGFSEQQDRVPNERDIPKNPSPLDDNSTKGKGFTGDVTDLQSQVPLSKSSSSDVKLETSKSEKQEKVVSGKGSSVPRKKNYDPDMFLKVNGKLYQRLGKIGSGGSSEVHKVISSDCSIYALKKIRLKGRDYATAYGFCQEIQYLNKLKGKSNIIQLIDYEVTDKTLLQEVMNGSMSNKDSRVKDDGCIYMVLEYGEIDLANMLSQKWKEMDSSDRTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDANGNTIKCGRPSDIWSLGCILYQMVYGRTPFSEFKTFWAKFKVITDRNHEIKYEPVSNPWLLDIMKKCLAWDRNERWRIPELLQHPFLVPPVPVLAQLSSSQDQSCKLLQLITEACANDPKALILCRQLQQLLRDPVTVPTSQVLTSRDQQCKLLSYVSKLCCQLQEYLSDPDT*	869

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g0349	868	MobiDBLite	consensus disorder prediction	1	48	-	-
	Vvi18g0349	868	ProSitePatterns	Protein kinases ATP-binding region signature.	495	517	IPR017441	GO:0005524
	Vvi18g0349	868	MobiDBLite	consensus disorder prediction	350	370	-	-
	Vvi18g0349	868	Gene3D	Transferase(Phosphotransferase) domain 1	603	785	-	-
	Vvi18g0349	868	MobiDBLite	consensus disorder prediction	416	449	-	-
	Vvi18g0349	868	MobiDBLite	consensus disorder prediction	397	415	-	-
	Vvi18g0349	868	MobiDBLite	consensus disorder prediction	9	48	-	-
	Vvi18g0349	868	MobiDBLite	consensus disorder prediction	397	476	-	-
	Vvi18g0349	868	ProSiteProfiles	Protein kinase domain profile.	489	782	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g0349	868	Gene3D	Phosphorylase Kinase; domain 1	482	569	-	-
	Vvi18g0349	868	PANTHER	MIXED LINEAGE PROTEIN KINASE	34	815	-	-
	Vvi18g0349	868	SUPERFAMILY	Protein kinase-like (PK-like)	481	790	IPR011009	-
	Vvi18g0349	868	FunFam	serine/threonine-protein kinase mph1 isoform X1	603	785	-	-
	Vvi18g0349	868	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	636	648	IPR008271	GO:0004672\|GO:0006468
	Vvi18g0349	868	SMART	serkin_6	489	782	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g0349	868	CDD	PKc_Mps1	487	782	IPR027084	-
	Vvi18g0349	868	FunFam	serine/threonine-protein kinase mph1 isoform X2	482	569	-	-
	Vvi18g0349	868	Pfam	Protein kinase domain	489	782	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g0349	Vvi-Chr18	3433101	3445082	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g0349	489	787	MAP Kinase Kinase Kinase	AT4G08500	29.000	3.11e-24	106

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Vvi18g0349		Pkinase	1.4e-55	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g0349	K08866		-	vvi:100262634	1614.36