Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0348 ATGCGTATAGATGAATCAGGGAAGCGCACTATTTCCAAATCAAGATCACTTCAAACACAAGGAAGTTCCTCTGCAACCCTCCCCTCCCTCTTCTTCTTGGTTTTCTCAAGTGGCAACGCATATGGGATTCTGAAACGAAAACTCTTTAGAGCCACACTCCCTGTTTGTTTGTTTGAGCTGAAACCTCATTTTCAGATCTCTCCTCCAATGGCTAAAACCAGAAACCCGAGAGAAGTCATTAAGGAAATCCGTACAAAGCAAGACCAGGTACCCCAAAAATCAGAGAAACCTCCTTCTTGGGCGGTTGTGAGAAGCCTTTTGACCTGCAAACATCTCCAGACTCAGCCACAGCAGCAAAAGCAAGAAGAAGGGCAACAACAGAAGCAACGGCGAGAACAAACCGTGGAGGGAAGCGGCAAAAAGTGCAAGAAAATGAAGTGTTCTGGTTCACTGTGTAGCAACACAAAGGTCATGCACAGGCCTGAAATGTCTTCCCCTGAAGACCACAAGAAAAGGCCTTCGATGGCTTCATCCAACAATGACGGTTCCAGCAGATCCATGAAAGCTCCTCTAAGTGAACTCAATGGGGTTGTTTCTTCCACTTCTTCCTCATTGTCTATTTCTGCGTCTTCTAACTCTTCTGTTGGTGGGTCCTTTAGAGGAATGCCTTTCAGGAGACTATCTGGGTGCTATGAGTGCAGAATGGTGGTTGACCCTGTTCTTGGAATCACTAGAGACCCTTCATTGAGAACCACCATCTGTTCTTGTCCTGATTGTGGTGAAATCTTCATGAAAGCTGAAAATTTGGAGCTTCATCAGGCCGTCAGACACGCCGTGTCCGAACTGGGCCCAGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAATCGAGCTGGCTAAAGAAACAAGCGCCAGTCTGCAAAATCGACCGCATTCTCAAAGTCCACAACACCCCCAAAACTATATCCAAATTCGAAGAATACAGAGACTCCATTAAAACCAAAGCCACCAAGCTCCAAAAGAAACACCCACGCTGCGTGGCAGACGGCAATGAACTCCTCCGCTTCCACTGCACCACTTTCGTCTGCTCCATCGGCCTCAACGGTTCCTCCAATCTCTGCAACTCAATTCCAAGCTGCAGTATCTGCAGTATCATCAAGAACGGTTTCAAGGTGGCCGGAGGGGTTCCCGGAAAAGGGATTCTGACCACAGCCACCAGCGGAAAAGCCCATGACAGTTCTAGAATGTCGTTGCCGGATGATAATGAGAAGAGGGCCATGCTGGTTTGCCGAGTGATAGCTGGGAGGGTGAAGAAGAGTGCAACTCAGTTGGAGGGAGGAGTCTGTACGGAGGAGTTTGACTCAGTGGCTGGGGTTGGTGGGGTCTACTCTAATTTGGATGAGCTATATGTGTCTAATCCTAAGGCTATTTTGCCTTGCTTTGTTGTTATCTACACAGAGTCTTAG 1470 0.4755 MRIDESGKRTISKSRSLQTQGSSSATLPSLFFLVFSSGNAYGILKRKLFRATLPVCLFELKPHFQISPPMAKTRNPREVIKEIRTKQDQVPQKSEKPPSWAVVRSLLTCKHLQTQPQQQKQEEGQQQKQRREQTVEGSGKKCKKMKCSGSLCSNTKVMHRPEMSSPEDHKKRPSMASSNNDGSSRSMKAPLSELNGVVSSTSSSLSISASSNSSVGGSFRGMPFRRLSGCYECRMVVDPVLGITRDPSLRTTICSCPDCGEIFMKAENLELHQAVRHAVSELGPEDTSKNIVEIIFQSSWLKKQAPVCKIDRILKVHNTPKTISKFEEYRDSIKTKATKLQKKHPRCVADGNELLRFHCTTFVCSIGLNGSSNLCNSIPSCSICSIIKNGFKVAGGVPGKGILTTATSGKAHDSSRMSLPDDNEKRAMLVCRVIAGRVKKSATQLEGGVCTEEFDSVAGVGGVYSNLDELYVSNPKAILPCFVVIYTES* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0348 489 MobiDBLite consensus disorder prediction 124 143 - -
Vvi18g0348 489 MobiDBLite consensus disorder prediction 113 188 - -
Vvi18g0348 489 Gene3D - 278 488 - -
Vvi18g0348 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 282 IPR013087 -
Vvi18g0348 489 ProSitePatterns Zinc finger C2H2 type domain signature. 254 277 IPR013087 -
Vvi18g0348 489 MobiDBLite consensus disorder prediction 1 22 - -
Vvi18g0348 489 SUPERFAMILY ADP-ribosylation 279 488 - -
Vvi18g0348 489 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 107 486 - -
Vvi18g0348 489 MobiDBLite consensus disorder prediction 161 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0348 Vvi-Chr18 3422419 3424214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0348 90 486 C2H2 Transcription Factor Family AT1G75710 44.009 6.03e-105 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi18g0348 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0348 - - vvi:100257501 902.123