LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g0332	ATGAACTGCACTGCCTCCAATCATCTGCTCTTCACGACCAGCCCAAATCTCACTCTCAGAGGCGACCGCTCACCAAAGCAATTGCTATTCTTCTTCTGCAAAATCCCAACTCCCTCTCCCAACGGTAACATTCCACAAACATACCATACTCGCCAAAACTCAGTGTGCGGACGAGTTCATTCACCACATTTCTGCTCTTCTCAAGATCCCATTGAGAAAAAGACACATGCCATCACCGAAATATTCGTTCTATTTGTATTCTCTCTGACGCTTCTCTGCATCCGCCTTCTCTCCAATGCGCTTCTGCCCGATTTTCCTCAGCGTTGGCGCAGTCTCGTGGCCTTTTCGGAAGAAGCTGAGGCCAGGGTCAGTGCTTATCCTTCACATTTGTGGAAAGCCATTGTGGCTTATGAGGATCGGAGATTCTTTAGCCATTTTGGAGTCGACCCAGTTGGGATTGCTCGTGCCGCGCTGTCCTTATCGGCTCTCGGGGGCGGCAGCACCATTACTCAACAGTCAATCAAATTTGTCGGTTGGGACTGTTCTTGCTTGGGAATATTCCATGAAAATTCTTCTGGTTCTTGTTATTTGGTTGAAAATGTGTTGGGATCCCTTATTTCAAGCTCCACAAATGAAAATGTTCAGTTGGGCTGCATCAAAGTTCTGGTTGGGTCTTCACCAAATATGGATGGTAACAACAGTTCTAGTAATCAAAGTCAGGAATTTCCAATAGCTGCTCTTGTACTCTTACCTTCAACTGGGTTCTTCCTGTTTGTTGCACTAGGATTTCTCTGGTGGAGAAGGTGGGGATTCTCCAAGAACAGGGACCTAAAATTAGGCCACTCAAGCTCGCCTTCTTCTGAAGACCTGGATGCCTTCTCCATTCCAGGCTTACCTATAAGGTTTGAATATGAAGAGATTGAGGCAGCAACTGATAATTTCAAGACCCAAATTGGGTCAGGTGGGTTTGGTGCCGTTTACAAGGGTATAATGCCTGATAAAACCCTTGTGGCAGTAAAGAAGATAACCAATTTGGGTGTCCAAGGGAAAAAGGAGTTCTGCACTGAGATTGCAGTTATTGGAAATATCCACCATGTCAATTTGGTCAAATTGAAAGGGTTTTGTGCCAAGGGGAGGCAGCGGCTATTGGTTTATGAGTATATGAATCGTAGCTCATTAGACCGGACTCTCTTCTCTAATGGACCTGTTTTAGAATGGCAAGAGAGGGTTGATATAGCTCTTGGAACAGCACGTGGGCTTGCATACCTGCACAGTGGGTGTGAACATAAGATCATCCATTGTGATGTTAAGCCTGAGAACATTCTCTTGCATGATAATTTCCAGGCAAAGATATCTGATTTTGGGCTCTCGAAGTTGTTAAGTCCTGAAGAGTCCACTCTATTCACAACAATGAGAGGCACTCGTGGCTATCTTGCACCAGAGTGGCTTACTAGCTCTGCAATCTCAGACAAAACAGATGTTTATAGTTTTGGAATGGTTCTGCTTGAACTTGTGAGTGGAAGGAAGAACTGCTCATTAAGAACACAAAGCCATAGCATTGATGATGGAAGTAGTGGTGGTGGCCACTCTTCATTGTTGTCTGGGTCAGAACCTGTGTACTTCCCACTATTTGCATTGGAGATGCATGAGCAAGGGAGGTATTTGGAGCTTGCTGATCCCAGGCTAGAGGGGCGGGTGACAAGCGAAGAGGTGGAGAAGTTAGTTCTTGTGGCTTTGTGTTGTGTTCATGAGGAGCCAACACTGAGGCCATGTATGGTTAGTGTTGTTGGCATGTTAGAAGGTGGGATAACTTTAAGTCAGCCAAGAACAGAATCTTTAAATTTCCTGCGCTTTTATGGACGGCGATTCACTGAGGCTTCCATGGTAGAAGAGACTGATGGGCAACAGACTGTTGTGTTGTATCCACAAGCAAATCTTGTCAAGAACACATGCTTAAAAAATGAGCGCACATTCTCAAGGAAAATTGTTGAGATGGTGCTAGCACTGGCATTGGAGAGAACAATATCAAAATGGAGAATATTGAGCTTATATATGAGTAAGATATACTGGGGACATGGTATTTACGGCGTTGAATCAGCATCGATTTTTTATTTTGGGAAGCATCCGTCCCTTCTCTGTCTGGGGGAGTCTGCACTGCTTGCTGGGATCATACCTGCACCAGAGCTTCGATCACCATTCAGGGACTGTAGCAGAGGGAAAACCTTCCAAGCTAGAGTTTTGAAGAGGATGGTGGAATTTGGATTTCTTGATGTTGAGACTGCACTTTTGGCTGTGAAACAATCTCTTCAACCACGTATTAATTGCCCAGAATATTCAGATGGAATCTTGCTCCAGTTGTCTTTACCCAATAAGGGACTTTATTGGGCCAGTAAAGGGAAACAAGGACATGTACAATTGCCTATCATGGAAATATGGGACTGGGAAAAAGAAAGCAAGGTATGGGAAGTAATGGAGGAGATGGAAAATTGGGCCTGTAGGCTTTCTGAACTGAAGAACAATAATTTCCGGTTGAAACTAAATGGGAGATGA	2550	0.4459	MNCTASNHLLFTTSPNLTLRGDRSPKQLLFFFCKIPTPSPNGNIPQTYHTRQNSVCGRVHSPHFCSSQDPIEKKTHAITEIFVLFVFSLTLLCIRLLSNALLPDFPQRWRSLVAFSEEAEARVSAYPSHLWKAIVAYEDRRFFSHFGVDPVGIARAALSLSALGGGSTITQQSIKFVGWDCSCLGIFHENSSGSCYLVENVLGSLISSSTNENVQLGCIKVLVGSSPNMDGNNSSSNQSQEFPIAALVLLPSTGFFLFVALGFLWWRRWGFSKNRDLKLGHSSSPSSEDLDAFSIPGLPIRFEYEEIEAATDNFKTQIGSGGFGAVYKGIMPDKTLVAVKKITNLGVQGKKEFCTEIAVIGNIHHVNLVKLKGFCAKGRQRLLVYEYMNRSSLDRTLFSNGPVLEWQERVDIALGTARGLAYLHSGCEHKIIHCDVKPENILLHDNFQAKISDFGLSKLLSPEESTLFTTMRGTRGYLAPEWLTSSAISDKTDVYSFGMVLLELVSGRKNCSLRTQSHSIDDGSSGGGHSSLLSGSEPVYFPLFALEMHEQGRYLELADPRLEGRVTSEEVEKLVLVALCCVHEEPTLRPCMVSVVGMLEGGITLSQPRTESLNFLRFYGRRFTEASMVEETDGQQTVVLYPQANLVKNTCLKNERTFSRKIVEMVLALALERTISKWRILSLYMSKIYWGHGIYGVESASIFYFGKHPSLLCLGESALLAGIIPAPELRSPFRDCSRGKTFQARVLKRMVEFGFLDVETALLAVKQSLQPRINCPEYSDGILLQLSLPNKGLYWASKGKQGHVQLPIMEIWDWEKESKVWEVMEEMENWACRLSELKNNNFRLKLNGR*	850

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g0332	849	SUPERFAMILY	Lysozyme-like	646	778	IPR023346	-
	Vvi18g0332	849	SMART	serkin_6	312	599	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g0332	849	Gene3D	Phosphorylase Kinase; domain 1	281	387	-	-
	Vvi18g0332	849	SUPERFAMILY	Lysozyme-like	122	177	IPR023346	-
	Vvi18g0332	849	PANTHER	OS07G0415500 PROTEIN	180	613	-	-
	Vvi18g0332	849	FunFam	Serine/threonine-protein kinase	388	607	-	-
	Vvi18g0332	849	ProSiteProfiles	Protein kinase domain profile.	312	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g0332	849	FunFam	serine/threonine-protein kinase PBS1-like	281	387	-	-
	Vvi18g0332	849	Gene3D	-	112	192	IPR036950	-
	Vvi18g0332	849	CDD	STKc_IRAK	318	601	-	-
	Vvi18g0332	849	ProSitePatterns	Protein kinases ATP-binding region signature.	318	341	IPR017441	GO:0005524
	Vvi18g0332	849	Pfam	Transglycosylase	121	177	IPR001264	-
	Vvi18g0332	849	Pfam	Transglycosylase	646	750	IPR001264	-
	Vvi18g0332	849	SUPERFAMILY	Protein kinase-like (PK-like)	289	599	IPR011009	-
	Vvi18g0332	849	Gene3D	-	643	779	IPR036950	-
	Vvi18g0332	849	Gene3D	Transferase(Phosphotransferase) domain 1	388	612	-	-
	Vvi18g0332	849	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	431	443	IPR008271	GO:0004672\|GO:0006468
	Vvi18g0332	849	Pfam	Protein kinase domain	315	518	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g0332	Vvi-Chr18	3298956	3306476	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g0332	249	608	Receptor kinase-like Gene Family	AT5G20050	39.523	3.02e-76	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Vvi18g0332		Pkinase	3.6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g0332	-		-	vvi:104882469	923.309