Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0328 ATGGCCATGGCTCTCGACAATACTGTCGACCTCGAATTTTCTGGTTATAGCACCACCACCACAACTACGGCTACTACCGCTACTGATCGAGATGACCACTATTGTAACTGGGACGACTGGTCTCCCGTGGTCGATTGGGACGCTTTGTCCGGTGAACAAGACGATTTCCGGGACCTGATTGAGTCTATGATGGATGATAGCGGCCTAAACCCAGTTCGAGCTGTTGAAGAAGGTTGCAACTCTGCATCCACCGACACCATGATCACGGACGAAGAGAACAATGGTCCGGATTTGAAGGGGTTAAGGCTGGTCCACCTGCTGATGGCTGCGGCGGAGGCTCTCACGGGCGTAAACAAGAGCCGTGATTTGGCTCGGGTGATATTGGTTCGGCTCAAGGAGTTGGTGTCCCCCACCGATGGAACCAACATGGAGAGGCTGGCGGCATATTTTACAGACGCCTTGCAGGGTTTGCTAGAAGGCGCCGGTGCCAAGCACATGATCGGCAATGGACACCATCGAGACGATCACCACCACCATCATCATCAGTCGGACGTCCTCGCTGCGTTCCAGCTGTTACAGGACATGTCACCATACGTCAAATTTGGTCACTTCACCGCCAATCAAGCCATCCTTGAAGCCGTGTCTAAAGAGCGGCGCATCCACATAGTGGATTACGACATCATGGAGGGGATTCAATGGGCGTCGCTGATGCAAGCCCTTGTCTCCAGGAAAGACGGCCCACCGGCGCCGCACCTCAGGATCACCGCATTATCCAGAGGCGGCGGAGGCCGCAGATCCATCGGAACCATTCAAGAGACGGGCCGACGCCTGACGGCTTTCGCGGCGTCGATCGGCCAACCATTTTCGTTTCACCAGTGCAGGTTGGATTCGGACGAGACGTTTCGACCGTCAGCGTTGAAGTTGGTGAGGGGAGAGGCCTTGATCATCAACTGCATGCTGCACCTGCCGCACTTCAGCTATCGTGCGCCGGATTCCGTGGCTTCCTTTCTATCAGGAGGCAAGACTCTGAAACCGAAACTGGTGACGTTGGTGGAGGAGGAGGTGGGGCCCACAGGAGACGGTGGGTTCGTGGGACGGTTCATGGACTCGCTGCACCACTACTCCGCGGTGTACGACTCGCTGGAGGCCGGGTTCCCAATGCAGGGACGGGCGAGGGCGTTGGTGGAGAGGGTATTCCTGGGGCCAAGGATAGCAGGGACACTGGGGCGAATCTACCGTGGGCGTGGGGGGCAGGAGGGTGGGAGTTGGGGGGAATGGTTGGATGGGGCAGGGTTCAGAGGTGTGGGCATAAGCTTCGCGAATCACTGTCAAGCAAAGTTGTTGTTAGGACTATTCAACGATGGGTATAGGGTGGAGGAGTTGGCAAACAATAGGATGGTTTTAGGCTGGAAATCCCGCCGTTTGCTCTCTGCTTCTGTTTGGTCCGCCTCTGATTCGGATTTATTAAATTAG 1473 0.5601 MAMALDNTVDLEFSGYSTTTTTTATTATDRDDHYCNWDDWSPVVDWDALSGEQDDFRDLIESMMDDSGLNPVRAVEEGCNSASTDTMITDEENNGPDLKGLRLVHLLMAAAEALTGVNKSRDLARVILVRLKELVSPTDGTNMERLAAYFTDALQGLLEGAGAKHMIGNGHHRDDHHHHHHQSDVLAAFQLLQDMSPYVKFGHFTANQAILEAVSKERRIHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGGGRRSIGTIQETGRRLTAFAASIGQPFSFHQCRLDSDETFRPSALKLVRGEALIINCMLHLPHFSYRAPDSVASFLSGGKTLKPKLVTLVEEEVGPTGDGGFVGRFMDSLHHYSAVYDSLEAGFPMQGRARALVERVFLGPRIAGTLGRIYRGRGGQEGGSWGEWLDGAGFRGVGISFANHCQAKLLLGLFNDGYRVEELANNRMVLGWKSRRLLSASVWSASDSDLLN* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0328 490 ProSiteProfiles GRAS family profile. 94 482 IPR005202 -
Vvi18g0328 490 Pfam GRAS domain family 103 481 IPR005202 -
Vvi18g0328 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 81 478 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0328 Vvi-Chr18 3254592 3256064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0328 110 482 GRAS Transcription Factor Family AT3G54220 35.417 2.29e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi18g0328 GRAS 3.8e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0328 - - vvi:100250491 929.858