Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0325 ATGTCTTTGAGCCCTCCTCGTGAAAGGAATAATGGCGACAGAACCTACCAGTTTTACTGGTGTTATCAGTGCAATAGGTCGGTCAGGATTGCGTCCGACAACCCGTCACAGATTATCTGTCCTCGCTGTCTGGGTCAGTTTCTACAAGAAATTGATACAACCAGGCCTAGGGCTTTCAATGAGATTATCACTTGGGATCCATTCCCAGAAGCCCGTTTATTGGAAGCACTTTCCCTGGTGCTTGATCCACCTCTCAGAGGCCTAAATAATGGTGTTGGTAGGGGTGATGAGGCTGAAACAGAAGCGGCTAGAAACAGAGGCAGGAGATGGCTGAGGAGGCGAAGCCACTCCAGAGAACATTGGGAGGCGGAAGCTGATACTGGAGTCCCTGGACGGCGGCGAAATAATGAATTGGGAGGGAGACTGGGGTGGCCCTTTGGTAATGGGTTGGGAGCTCAGGGTAGGACTTGGATTGTCCTGAGGCCCACCGGTCCTCCTGGCCAAAATGGACCCTTTCCCCAGTCAGAAAACATGAGACCGCCAAGGTTTGAGCTCAGGGATTTCTTCTCTGGACCAGGGCTAAATGAATTGATCGAAGAACTCACCCAAAATGACAGACCGGGTCCTCCTCCTGCTCCTGATTCCGCCATCAATGCAATGCCCACCGTGAAAATTACGCCCACGCATTTGATTAACGATTCGCATTGCCCCGTTTGCAAAGAGGAGTTTAAGGTTGGTGAGGAAGTGAGAGAGTTGCCCTGCAACCATGTTTATCATTCAGACTGTATCGTTCCATGGCTGCAGCTTCACAATTCATGTCCAGTTTGCCGGCATGAGGTTCCGGTTCCTTCTGATGAGTCTGATGAGAGTCATGAGGGAGAGGATCGGCGGGTGCGGTGCATGAGGTTGAGACAGTTAGCGTCTTTGTGGCCCTTCCGTTCTAGGTACCGCCGAATTAATCCCCAGGATCGTGACGTTACTCCTCACAGAGAGATCCATCCGTGA 1005 0.5144 MSLSPPRERNNGDRTYQFYWCYQCNRSVRIASDNPSQIICPRCLGQFLQEIDTTRPRAFNEIITWDPFPEARLLEALSLVLDPPLRGLNNGVGRGDEAETEAARNRGRRWLRRRSHSREHWEAEADTGVPGRRRNNELGGRLGWPFGNGLGAQGRTWIVLRPTGPPGQNGPFPQSENMRPPRFELRDFFSGPGLNELIEELTQNDRPGPPPAPDSAINAMPTVKITPTHLINDSHCPVCKEEFKVGEEVRELPCNHVYHSDCIVPWLQLHNSCPVCRHEVPVPSDESDESHEGEDRRVRCMRLRQLASLWPFRSRYRRINPQDRDVTPHREIHP* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0325 334 FunFam E3 ubiquitin-protein ligase RING1-like 200 283 - -
Vvi18g0325 334 SUPERFAMILY RING/U-box 216 283 - -
Vvi18g0325 334 SMART ring_2 236 276 IPR001841 -
Vvi18g0325 334 ProSiteProfiles Zinc finger RING-type profile. 236 277 IPR001841 -
Vvi18g0325 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 176 281 - -
Vvi18g0325 334 Pfam Ring finger domain 235 277 IPR001841 -
Vvi18g0325 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 283 IPR013083 -
Vvi18g0325 334 Pfam zinc-ribbon 17 51 IPR039525 GO:0061630
Vvi18g0325 334 CDD RING-H2_RNF126-like 236 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0325 Vvi-Chr18 3233100 3234804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0325 179 313 C3H Transcription Factor Family AT1G68180 44.203 3.49e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0325 K11982 - vvi:100262515 680.248