Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0323 ATGGTGAAGAGTGAGCCAAAGATCCAATCAGAGCCGTTGAAGCCAATGTCATCACCATCATCATCTTCGTCAACATCGTCATCGTCATCATGTAGGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGTTCATGGGTGTCCGAGATAAGAGCACCAAATCAGAAAACAAGGATATGGCTGGGTTCCTATTCCACGCCAGAAGCTGCCGCTAGAGCCTATGATGCTGCACTGCTGTGCCTCAAGGGCGCCTCCGCCAATCTCAACTTCCCTACCATCACTTCTTCTTACCATCTTCCTGATACTCTCTTGTCCCCTAAGTCCATCCAAAGAGTCGCTGCAGCAGCTGCCAATAGTTTTGCGGATAATGCCGCCGCCGCCGCCACCACCACCACCACCACCCCAACCACCCCCACCACTCCACCCTCTCCTCCTCCTCCCTCCTCCTCATCATCAATCTCTTCGGCATCGACTTCATCTTCACCATCAGATCAACTCGATGACGATGTTTCAGTACTAATGTCATCCATGGCCAATGAACCAATGTCCATGATGGCATCATGGTATGACAACTTCGACAGCCTGCAATCCCCAAAATACATGGACCAAATGTTCAGTAATTGTGCCTTGTTCAATCCAGTACCAACGATTGAAGATGACTATGAAGAAGGTGATATCCATCTGTGGAACTTCTGCTGA 702 0.4957 MVKSEPKIQSEPLKPMSSPSSSSSTSSSSSCRKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGASANLNFPTITSSYHLPDTLLSPKSIQRVAAAAANSFADNAAAAATTTTTTPTTPTTPPSPPPPSSSSSISSASTSSSPSDQLDDDVSVLMSSMANEPMSMMASWYDNFDSLQSPKYMDQMFSNCALFNPVPTIEDDYEEGDIHLWNFC* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0323 233 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Vvi18g0323 233 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Vvi18g0323 233 Gene3D AP2/ERF domain 34 94 IPR036955 GO:0003700|GO:0006355
Vvi18g0323 233 MobiDBLite consensus disorder prediction 151 168 - -
Vvi18g0323 233 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Vvi18g0323 233 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Vvi18g0323 233 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Vvi18g0323 233 MobiDBLite consensus disorder prediction 1 38 - -
Vvi18g0323 233 MobiDBLite consensus disorder prediction 11 32 - -
Vvi18g0323 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 184 - -
Vvi18g0323 233 FunFam ethylene-responsive transcription factor ERF014-like 34 94 - -
Vvi18g0323 233 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Vvi18g0323 233 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Vvi18g0323 233 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Vvi18g0323 233 MobiDBLite consensus disorder prediction 127 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0323 Vvi-Chr18 3219658 3220359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0323 36 232 AP2-EREBP Transcription Factor Family AT1G21910 51.174 7.48e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi18g0323 AP2 3.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0323 - - vvi:100853357 343.199