Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0318 ATGGAGGACCAAACATCATGTGCCAAAATTTGTGTCGTCTTCAGTAGGATGAAACCTTACGTGCTTATGGTGGCCTTGCAGTTTGGGTCCGCAGGGATGTACATCATTTCCATGGCTACTCTCAACCATGGTATGAGCCGTTTCGTGCTGATCGTTTATCGTAATGCTGTTGCTGCACTGGCCATGGCACCTTTTGCTCTACTTCTTGAAAGGAAAATAAGGCCAAAGATCACAATCGCTATCTTCTTAAAGATAATGGCCCTGGGATTTCTGGAGCCGATTCTTGATCAGAACTTATCCTACTTGGGTATGCAATACACATCAGCATCATTCACATCTGCCGTTATGAATGCTGTTCCGGCTGTTACCTTTGTAATGGCAGTTGTTTTCCGGTTGGAGCACATAAAAATTAAAGAGAGACGGAGCCAAGCTAAGATCGTGGGCACGGTACTGACTTTTTCAGGAGCACTGCTTATGACTCTGTATAAAGGCCCCATCATTGATCTAATATGGTCACATAAAACAAGTCACAATGCCAATCACTCTTCCACCGACACACACTGGATAACTGGGACTTTGTTGATCCTTGTTGGTTGTTGTGCCTGGTCTGCCTTCTACATACTGCAATCAATAACAATAAAGACGTACCCAGCCGAGCTCTCTCTTTCCACCTTGATATGCTTGATGGGTGCCATCCAAAGTGGGGCAGTAGGGCTTGTAGCAGAGCGACACCCCAGCGCCTGGGCCATTGGCTGGGACTCTAGGCTACTTGCTCCTGTTTATACGGGGATTGTCAGCTCTGGATTAACATACTACGTGCAAGGCCTGGTGATGAAGACAAGAGGCCCAGTGTTTGTGACAGCATTCAACCCTCTTTGCATGATCATTGTAGCTGCTCTTGGGACTCTCATTCTAGCTGAGCAACTCCATCTTGGAAGTATCATTGGAGCCATTATCATCGCAATCGGCCTTTACTCTGTGGCATGGGGTAAAAGCAAGGACCAATTTGGGCCAACACCAACCACAACAGAAGAAAAGGGTGATGCCTACGAATTGCCCATTTCAGCAACCGAGGGTAGCAAGTTGGTGATTGAGGCAAATAACTATGGTGACCATGCTGGAAAATCCAATTTTCCAGTTAAGAAATAG 1149 0.463 MEDQTSCAKICVVFSRMKPYVLMVALQFGSAGMYIISMATLNHGMSRFVLIVYRNAVAALAMAPFALLLERKIRPKITIAIFLKIMALGFLEPILDQNLSYLGMQYTSASFTSAVMNAVPAVTFVMAVVFRLEHIKIKERRSQAKIVGTVLTFSGALLMTLYKGPIIDLIWSHKTSHNANHSSTDTHWITGTLLILVGCCAWSAFYILQSITIKTYPAELSLSTLICLMGAIQSGAVGLVAERHPSAWAIGWDSRLLAPVYTGIVSSGLTYYVQGLVMKTRGPVFVTAFNPLCMIIVAALGTLILAEQLHLGSIIGAIIIAIGLYSVAWGKSKDQFGPTPTTTEEKGDAYELPISATEGSKLVIEANNYGDHAGKSNFPVKK* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0318 382 Pfam EamA-like transporter family 190 327 IPR000620 GO:0016020
Vvi18g0318 382 Pfam EamA-like transporter family 19 160 IPR000620 GO:0016020
Vvi18g0318 382 PANTHER WAT1-RELATED PROTEIN 19 341 IPR030184 GO:0016020|GO:0022857
Vvi18g0318 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
Vvi18g0318 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0318 Vvi-Chr18 3190200 3192500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0318 15 368 Nodulin-like Gene Family AT4G08300 51.913 2.83e-136 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0318 - - vvi:100242002 741.495