Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0317 ATGGCAAACCAAAGTGGGAACTCATGTATAGTGTACCTCAATAAGATGAAACCTTATTTGCTTATGGTAGCCTTGCAATTTGGCTCTGCAGGGATGTACATAATCTGCATGGCCACCCTCACCCATGGGATGAGCCGTTACGTTCTCGTTGTGTACCGCAATGCGGTAGCTACGCTTGCTATCGCGCCCTTTGCTCTGCTTCTTGAAAGGAAAGGAAGGCCAAAGTTGACATTCTCAATCTTCTTGAAGATTATGGCGCTAGGCTTTCTGGAGCCAATTGTTGATCAGAACTTATCCTACTTGGGAATGCAATACACATCAGCCTCATATGCATCCGCCATTATGAATGCTGTTCCGGCTGTTACTTTTGTTATGGCGATTATTTTTCGATTAGAGCACATAAAAATTAAGGAGACACGTACTCAAGCCAAGATCATTGGAACCCTGGTGACCTTTTCTGGAGCATTGCTCATGACTTTGTACAAGGGCCCCATCATCGATATAATGCACTCACACAAAGCAAGTCACCAAGCAAACCACTCGTCCTCTAAACATTGGCTCATCGGAACAATTTTGATACTTATGGGCTGTTGTGCTTGGTCTGCCTTTTTCATATTACAATCCATAACAATTAAGGCATACCCAGCTGAGCTCTCGCTTTCCACCTTGATATGCTTGATGGGCACGGTCCAAAGTGCGGCTGTAGGGCTTATAGCAGAGCGGAAGCCACGCACCTGGTCAATTGGCTGGGACTCTAGGCTACTTGCTCCTGTTTATACAGGTATAATCAGCTCTGGAATAACATACTATGTGCAAGGCCTGGTGATGAAGACGAAGGGCCCAGTGTTTGTAACAGCATTCAACCCTCTTTGCATGGTCATCGTTGCTGCTCTGGGGTCTCTCATTCTAGCTGAGGAGCTCCACCTAGGAAGTATCATTGGAGCCATCATCATCGCTGTAGGCCTTTACTCGGTGGCGTGGGGCAAAAGCAAGGATCATTTCAGCCCAGCACCATCAACAACAGGAGAAAAGACCGATCCCTACCAGCTGCCCATTTTGGCGACTGAGAACACCAAGTTGGTGATTGAGGGAAGTAATTACGATGATGATGAAAAAGCTGCAAAATCCAAAGAAAAAACTTTGAGCAGAAAGTTCCGGTCCTCCCCTGGATTTAAGTTATGCTGCAAGGATTGTGGTTGTAGTTATTTTAAAATAGAAGGGAGTCAATGGTCATGTGTACTTAGATTTCGAGAACTTGCTGATGCTGGATTTGTGCAATCTCTCAAAAAAGCAACCTGGGAGGTTTGTATGCCAATTATTTATGGATCATTACATCAGCCTCACTATGTTAATTGTTTTTCTTAG 1365 0.4484 MANQSGNSCIVYLNKMKPYLLMVALQFGSAGMYIICMATLTHGMSRYVLVVYRNAVATLAIAPFALLLERKGRPKLTFSIFLKIMALGFLEPIVDQNLSYLGMQYTSASYASAIMNAVPAVTFVMAIIFRLEHIKIKETRTQAKIIGTLVTFSGALLMTLYKGPIIDIMHSHKASHQANHSSSKHWLIGTILILMGCCAWSAFFILQSITIKAYPAELSLSTLICLMGTVQSAAVGLIAERKPRTWSIGWDSRLLAPVYTGIISSGITYYVQGLVMKTKGPVFVTAFNPLCMVIVAALGSLILAEELHLGSIIGAIIIAVGLYSVAWGKSKDHFSPAPSTTGEKTDPYQLPILATENTKLVIEGSNYDDDEKAAKSKEKTLSRKFRSSPGFKLCCKDCGCSYFKIEGSQWSCVLRFRELADAGFVQSLKKATWEVCMPIIYGSLHQPHYVNCFS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0317 454 Pfam EamA-like transporter family 188 325 IPR000620 GO:0016020
Vvi18g0317 454 Pfam EamA-like transporter family 19 159 IPR000620 GO:0016020
Vvi18g0317 454 PANTHER WAT1-RELATED PROTEIN 17 339 IPR030184 GO:0016020|GO:0022857
Vvi18g0317 454 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 330 - -
Vvi18g0317 454 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0317 Vvi-Chr18 3180624 3188491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0317 13 368 Nodulin-like Gene Family AT1G44800 52.210 1.50e-133 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0317 - - vvi:100264284 722.235