Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0316 ATGGGAGACCAAACCCTTTTTGTCAAGCTGAGCCTGATGTTCTCCAAGGTGAAAGCGTATTTGGGCATTGTCTCCCTGCAGTTCGGCTATGCTGGCATGTACATCATCACCATGGTTTCTTTGAAGCATGGGATGAATCACTACGTACTTGTAGTGTACCGACATGCAGTAGCCACTCTTGTGATCGCGCCTTTCGCACTTGTTCTTGAAAGGAAAGTAAGGCCAAAGATGACACTCTCAACCTTCCTAAAAATAATGGTGCTTGGCTTCCTAGAGCCAGTGCTTGATCAAAACTTATACTATGTGGGGATGAAGTATACATCAGCAACCTTTGCTTCTGCCACTGTCAATGTCCTCCCTGCTATTACTTTCATACTGGCAATTATCTTCAGGTTGGAGAAAATTAATATTAAGAAGATACCCAGCCAAGCTAAGGTGATCGGAACCTTAATCACAGTCACAGGAGCCATGGTGATGACACTGTACAAAGGTCCCATCATTGACTTTATACACACACGAGGAATAAGCCACCATGAATCCTCCAGTGATCCCTCGGCAGGCCAAAATTGGGCCACCGGAACCCTAATGCTCCTAGGCAGCTGCTTTGGTTGGTCTGGTTTCTTCATATTGCAATCATTTACACTGAAGCAATACCCAGCGGAGCTCTCTCTCACAGCCTTGATATGCTTTATGGGGACGGTGCAAGGAGCGGCCGTGGCACTTGTGATGGAACGCGACAAAGCTGCTTGGGCAGTAGGCTTCGACTCCAGAATCTTGGCTGCAGCTTATTCTGGGGTAGTTTGCTCTGGAATTGCATATTATGTGCAAAGTCTAGTGATCAAAGAACGAGGCCCCGTGTTTGTAACTGCTTTCAGCCCTCTGTGCATGATTATCACTGCAGCTCTGGGGTCCTTCATTTTGGCCGAGAAACTCCACCTGGGAAGTATACTTGGAGCGGCCGTGATAGTCGTAGGCCTTTATTCGGTGGTGTGGGGCAAAAGCAAGGAGGCCAGAAGCTCAGCATCACAGGCGCCGACAGATGAGAAAGCAGGTGGGAGCCATGAATTGCCAGTTGCAAGCAGCACTAAACCAAGCATTGTCCATAACAACAATATGGAAGGAGATGGTGGAATGTTGAAGATTCGCGTGTCAGAGGCATCATCAATGATTGAATGA 1176 0.4762 MGDQTLFVKLSLMFSKVKAYLGIVSLQFGYAGMYIITMVSLKHGMNHYVLVVYRHAVATLVIAPFALVLERKVRPKMTLSTFLKIMVLGFLEPVLDQNLYYVGMKYTSATFASATVNVLPAITFILAIIFRLEKINIKKIPSQAKVIGTLITVTGAMVMTLYKGPIIDFIHTRGISHHESSSDPSAGQNWATGTLMLLGSCFGWSGFFILQSFTLKQYPAELSLTALICFMGTVQGAAVALVMERDKAAWAVGFDSRILAAAYSGVVCSGIAYYVQSLVIKERGPVFVTAFSPLCMIITAALGSFILAEKLHLGSILGAAVIVVGLYSVVWGKSKEARSSASQAPTDEKAGGSHELPVASSTKPSIVHNNNMEGDGGMLKIRVSEASSMIE* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0316 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 256 335 - -
Vvi18g0316 391 PANTHER WAT1-RELATED PROTEIN 21 342 IPR030184 GO:0016020|GO:0022857
Vvi18g0316 391 Pfam EamA-like transporter family 31 160 IPR000620 GO:0016020
Vvi18g0316 391 Pfam EamA-like transporter family 193 330 IPR000620 GO:0016020
Vvi18g0316 391 MobiDBLite consensus disorder prediction 340 374 - -
Vvi18g0316 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0316 Vvi-Chr18 3177169 3180121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0316 15 385 Nodulin-like Gene Family AT4G08300 61.765 1.85e-162 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0316 - - vvi:100242142 759.214