Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0291 ATGGGGGATTCAAAGGTGGAGACAATCTCGAGACTAGCTCAGTGGAGGATCGACAACTTTGGACCCTGTTCCTTCAAAAAGTCCGATCCATTCAAGGTCGGAATCTGGAACTGGCACTTATCTATTGAGAAGAATAGGTATATGTATATTCGTCTATTTCCGGAGCCCTCCAGAGCTTCAAAAGAACAGCCTCCTATAGCTAGATTTGTTCTCCGCGTCTCCAATTCCGCCGCCTCCAGGAGGCCGTACATCTCCCCTATTCATGAGAGACTGCTTCGGACCAGTGATGACTTTGTCTGGCCTGTTGATTCCACCTTTCATGGCCGCTTCGTCATTGATGTCGAGTTTCTGGACTTGAAGATATGCCCATTGAATGGTGGGGAAGCCAGCTCAATATGGCCCAGTGATGGAGTGATGCAATCTCTAGCAGCTCAAAGCACTCTTCGGTGCCTCTCTCGCATGCTTAATGAGGCAATCCATGCCGATGTCACCATTAACACTGCTGATGGCACTCTAAGAGCTCACAAGGCAATTTTATCAGCAAGTTCCCCTGTGTTCCAAAGCATGTTCCTTCACAACCTCAAGGAGAAGTCGTCCTCTACAATCGACATAGAAGACTTGTCTCTGGAATCTTGCATGGCTCTACTTAGTTACTTGTATGGCAACATAAAACAAGAGGATTTCTGGAAGCACCGGCTGGCACTGCTGGGAGCGGCAAACAAGTATGACATTACAGACCTAAAAGATGCCTGTGAGGAAAGCCTATTGGAAGACATCAACTCCGGAAATGTCTTGGAGAGGCTGCAGGAAGCATGGCTTTACCAGCTTAACAAGCTCAAAAAAGGATGCTTGATGTACTTACTCGATTTTGGTAAGATATATGATGTTAGAGAGGAAATGAATAACTTCTTCAGGCAGGCTGACAGGGAACTGATGCTGGAGATGTTTCAGGAGGTGCTTACAGTTTGGAAACCAGCTTAA 981 0.4659 MGDSKVETISRLAQWRIDNFGPCSFKKSDPFKVGIWNWHLSIEKNRYMYIRLFPEPSRASKEQPPIARFVLRVSNSAASRRPYISPIHERLLRTSDDFVWPVDSTFHGRFVIDVEFLDLKICPLNGGEASSIWPSDGVMQSLAAQSTLRCLSRMLNEAIHADVTINTADGTLRAHKAILSASSPVFQSMFLHNLKEKSSSTIDIEDLSLESCMALLSYLYGNIKQEDFWKHRLALLGAANKYDITDLKDACEESLLEDINSGNVLERLQEAWLYQLNKLKKGCLMYLLDFGKIYDVREEMNNFFRQADRELMLEMFQEVLTVWKPA* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0291 326 Pfam BTB/POZ domain 153 257 IPR000210 GO:0005515
Vvi18g0291 326 CDD BTB_POZ_ZBTB_KLHL-like 160 242 - -
Vvi18g0291 326 SUPERFAMILY POZ domain 144 257 IPR011333 -
Vvi18g0291 326 PANTHER OS08G0495500 PROTEIN-RELATED 1 325 IPR044714 -
Vvi18g0291 326 ProSiteProfiles BTB domain profile. 161 220 IPR000210 GO:0005515
Vvi18g0291 326 Gene3D Potassium Channel Kv1.1; Chain A 138 288 IPR011333 -
Vvi18g0291 326 SMART BTB_4 161 259 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0291 Vvi-Chr18 2877455 2879921 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi18g0291 BTB 3.7e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0291 K10523 - vvi:100257421 661.373