Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0286 ATGAGTTCCAATCGATTGGACTCATACCCCATGTCCAAACTGCAATTTGAGGGAGAAGATGAAGAAGAACTGGGCAAGTTGGCCGTTCGCTTGGCCAACGGCATCATTCTTCCGATGGCTTTGAAATCGGCTCTGGAGCTTAACCTCATCGAAATTTTGGCCGGAGCCGGCGACGGCGCGTTCCTCTCTCCCTCCGAGATCGCGGCTTACCTTCCCGCCCGGAACCCCGATGCGCCGGTCCTGCTGGACCGGGTTCTGAGGCTTCTCGCCAGCTACTCTATTCTCAAGTGCTCTCTGCGGACCCTTGACAATGGTGAAGTGGAGAGATTGTACGGCGTTGGACCCATTTGCAAGTTCCTCACCCGGAATCCAGACGGTGGGTCGATTGGTCCTCTGTTTCTGTTGCACCACGACAAGGTCTTCATGGAGAGCTGGTACCACTTGAATGATGCTATACTGGAAGGAGGAATTCCCTTCAATCGGGCGTACGGAATGACAGCGTTTGAATACCCAGGAACAGATCAAAGATTCAACAGGGTGTTCAATGAGGCAATGTCAAATCATACTACGTTGATAATGAAGAGGATACTCCAGATTTACAAAGGGTTTGAAGGCCTCAAAGTGTTGGTTGATGTGGGAGGTGGTATTGGGGTCACTCTCAGAATCATCACTTCAGAGTATCCTCAGATTAAGGGCATCAATTATGATCTACCTCATGTTTTAGCAGACGCCCCCTCTTATCCTGGTGTGGAGCATGTTGGGGGAGATATGTTTGAGAGTGTTCCCAAAGGGGACGCCATTTTTATGAAGTGGATTCTTCATGACTGGAGTGATGAGCACTGTCTGAAGCTTCTCACCAACTGCTTTGAAGCTCTCCCTGATAACGGGAAGGTGATCATCGTGGAATCCATTCTTCATGTGGCTCCAGAGAACACAGTCTCAGCCAACATTCCTTTCGAGCAAGATCTACTCATGCTGGCTCAAAACCCTGGAGGAAAAGAAAGGACCCAGAAGGAGTATGAGACCTTGGCCATAAAATCAGGATTTTCTTGCTGCAAGGTCATCTGCAGTGTTTACAACAGCTGGGTTATGGAGTTCCACAAGACAGCACATCCATAG 1119 0.4942 MSSNRLDSYPMSKLQFEGEDEEELGKLAVRLANGIILPMALKSALELNLIEILAGAGDGAFLSPSEIAAYLPARNPDAPVLLDRVLRLLASYSILKCSLRTLDNGEVERLYGVGPICKFLTRNPDGGSIGPLFLLHHDKVFMESWYHLNDAILEGGIPFNRAYGMTAFEYPGTDQRFNRVFNEAMSNHTTLIMKRILQIYKGFEGLKVLVDVGGGIGVTLRIITSEYPQIKGINYDLPHVLADAPSYPGVEHVGGDMFESVPKGDAIFMKWILHDWSDEHCLKLLTNCFEALPDNGKVIIVESILHVAPENTVSANIPFEQDLLMLAQNPGGKERTQKEYETLAIKSGFSCCKVICSVYNSWVMEFHKTAHP* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0286 372 PIRSF O-mtase 7 368 IPR016461 GO:0008168
Vvi18g0286 372 SUPERFAMILY "Winged helix" DNA-binding domain 20 123 IPR036390 -
Vvi18g0286 372 Gene3D - 8 120 IPR036388 -
Vvi18g0286 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 366 IPR029063 -
Vvi18g0286 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 368 IPR016461 GO:0008168
Vvi18g0286 372 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Vvi18g0286 372 FunFam Caffeic acid 3-O-methyltransferase 9 120 - -
Vvi18g0286 372 Gene3D Vaccinia Virus protein VP39 121 368 IPR029063 -
Vvi18g0286 372 PANTHER O-METHYLTRANSFERASE 31 349 IPR016461 GO:0008168
Vvi18g0286 372 FunFam Caffeic acid O-methyltransferase 121 368 - -
Vvi18g0286 372 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0286 Vvi-Chr18 2845459 2846977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0286 21 368 Monolignol Biosynthesis Gene Families AT5G54160 62.644 6.85e-168 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0286 K13066 - vvi:100242108 758.059