Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0283 ATGGATCTTGTTTCGTTAGAGCAGATGGAAATGAAGCAAGACAATGAAAGCACCCAGCAGCAGAAGCAGCTGGAACAGCATTTTCATGTTTTAGCGGTGGATGATAGTCTTATTGACAGAAAGCTTCTGGAGAAGCTGCTCACTGTTTCTTCATATCATGTGACTTGCGTGGAATCTGGGGATAAAGCTCTTGAGTACCTGGGTCTGCTAGATGGCCGAGACAATGATACTACATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCATCATCATCTTCTTCAGCCAAACCTTCCCAGCAAGAGATGCAGGGGTTGAAAGTGAACTTGATCATGACAGACTATTGTATGCCCGGGATGAGCGGTTATGATTTGCTGAAACGAGTCAAGGGATCTTCATGGAAAGATGTTCCAGTTGTTGTCATGTCATCAGAGAATGTACCCTCCAGAATCAACATGTGTTTGGAAGGAGGGGCAGAAGATTTCCTGTTGAAGCCTGTTCAGTTATCGGATTTGGAGAAGCTTCAACCTCATCTACTCAAATCTCTTAGCCAGTACCCCTGTGAAAACATCAACAGTAGTAACGAGGATGACGAAAACATAAATAAAAACAACAGTACTAGTTGCAGCAGCAGTAAGAGCAACAATGGAGTTTGCAAAAGGAAGGCATTAGTGTCTGCAGATCCCTTAGAGAGAAGATCAAAACTAAAAGATTAG 729 0.4252 MDLVSLEQMEMKQDNESTQQQKQLEQHFHVLAVDDSLIDRKLLEKLLTVSSYHVTCVESGDKALEYLGLLDGRDNDTTSSSSSSSSSSSSSSSSSSSSSAKPSQQEMQGLKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVVMSSENVPSRINMCLEGGAEDFLLKPVQLSDLEKLQPHLLKSLSQYPCENINSSNEDDENINKNNSTSCSSSKSNNGVCKRKALVSADPLERRSKLKD* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0283 242 CDD REC_typeA_ARR 30 179 - -
Vvi18g0283 242 ProSiteProfiles Response regulatory domain profile. 29 184 IPR001789 GO:0000160
Vvi18g0283 242 Gene3D - 29 210 - -
Vvi18g0283 242 SUPERFAMILY CheY-like 107 185 IPR011006 -
Vvi18g0283 242 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g0283 242 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 218 IPR045279 GO:0009736
Vvi18g0283 242 MobiDBLite consensus disorder prediction 75 106 - -
Vvi18g0283 242 SUPERFAMILY CheY-like 28 67 IPR011006 -
Vvi18g0283 242 SMART REC_2 28 180 IPR001789 GO:0000160
Vvi18g0283 242 Pfam Response regulator receiver domain 104 178 IPR001789 GO:0000160
Vvi18g0283 242 MobiDBLite consensus disorder prediction 195 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0283 Vvi-Chr18 2802996 2805108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0283 25 186 Response Regulator Gene Family AT3G57040 55.828 3.42e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi18g0283 Response_reg 7.8e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0283 K14492 - vvi:100259216 404.445