Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0280 ATGGCGGAGGCTTTCTCACTCTCTCTGACACCACCGCAAATGGCTTCTCTGAGTGGCGCCGCCGCGGCCTCCTCCCGCCTCCTCCCCAGAGCGCGGCTCGGTTTTTCAACTTCGTCTTCAACTCCTTCTCCTTCTTCACTCTCCCTTTCCTCTCTCAAAGGCCTCCGATCCTCTCCTCTGCTCTCTCACCTCCTCCACCGTCAGAAAACGACTTCGGTCCGTGCATCCAGCGGTGGCTTGGGTTTCAGCTCCGTGGCGGCTCCGAAATGCTCGGCATCCGATCCGGATCAGCTGAAGAGTGCTAGAGAAGACATCAAGGAGCTTCTCAAATCTAAATTTTGTCATCCTCTTTTGGTTCGCCTAGGATGGCATGACGCAGGTACTTATAACAAGAACATTGAGGAGTGGCCTCTAAGAGGTGGAGCAAATGGAAGTCTGAGATTTGAAATTGAGCTGAAACATGGGGCCAATGCAGGTCTTGTTAATGCAGTGAAACTTCTTCAGCCTATCAAAGACAAGTATTCTGGTGTGACATATGCAGACTTATTCCAATTGGCCAGTGCTACTGCCGTGGAGGAGGCTGGCGGACCCAAAATCCCCATGAAGTATGGAAGGGTGGATGCTTCAGGACCTGAACAGTGCCCAGAAGAAGGGAGGCTTCCTGATGCTGGCCCCCCTTCACCTGCTGATCATCTACGTGATGTTTTCTACAGAATGGGGCTAAATGACAAGGAAATAGTTGCATTATCGGGTGCACACACGCTAGGAAGGTCCAGACCGGAACGCAGTGGTTGGGGAAAGCCGGAGACTAAGTATACGAAAGATGGACCAGGGGCACCAGGAGGACAGTCCTGGACAGTGCAATGGCTGAAGTTTGATAATTCTTACTTCAAGGATATCAAAGAAAAAATAGATGAAGAACTACTTGTGTTGCCAACTGATGCTATTCTTTTCGAAGATCCATCTTTCAAGGTATATGCTGAGAAATATGCGGTAGATCAAGAAGCATTTTTCAAAGATTATGCTGAAGCCCATGCAAAACTCAGTAACCTTGGAGCTAAATTTGATCCTCCTGAGGGTATTGTGATAGATGATGGTCCTGCAGAAGCTGCACCAGAGAAATTTGTGGCAGCCAAGTATTCATCCGGGAAGGACTAA 1158 0.4922 MAEAFSLSLTPPQMASLSGAAAASSRLLPRARLGFSTSSSTPSPSSLSLSSLKGLRSSPLLSHLLHRQKTTSVRASSGGLGFSSVAAPKCSASDPDQLKSAREDIKELLKSKFCHPLLVRLGWHDAGTYNKNIEEWPLRGGANGSLRFEIELKHGANAGLVNAVKLLQPIKDKYSGVTYADLFQLASATAVEEAGGPKIPMKYGRVDASGPEQCPEEGRLPDAGPPSPADHLRDVFYRMGLNDKEIVALSGAHTLGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKEKIDEELLVLPTDAILFEDPSFKVYAEKYAVDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVIDDGPAEAAPEKFVAAKYSSGKD* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0280 385 PRINTS Plant ascorbate peroxidase signature 115 130 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 PRINTS Plant ascorbate peroxidase signature 176 194 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 PRINTS Plant ascorbate peroxidase signature 195 207 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 PRINTS Plant ascorbate peroxidase signature 94 114 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 Pfam Peroxidase 102 332 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 Gene3D - 101 354 - -
Vvi18g0280 385 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 69 355 IPR044831 GO:0004601|GO:0034599
Vvi18g0280 385 CDD ascorbate_peroxidase 86 356 - -
Vvi18g0280 385 ProSiteProfiles Plant heme peroxidase family profile. 177 362 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 FunFam L-ascorbate peroxidase S chloroplastic/mitochondrial 101 225 - -
Vvi18g0280 385 MobiDBLite consensus disorder prediction 208 227 - -
Vvi18g0280 385 PRINTS Haem peroxidase superfamily signature 177 194 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 PRINTS Haem peroxidase superfamily signature 285 300 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 PRINTS Haem peroxidase superfamily signature 115 129 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 PRINTS Haem peroxidase superfamily signature 195 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 MobiDBLite consensus disorder prediction 253 280 - -
Vvi18g0280 385 ProSitePatterns Peroxidases proximal heme-ligand signature. 245 255 IPR019793 -
Vvi18g0280 385 FunFam L-ascorbate peroxidase T, chloroplastic 223 346 - -
Vvi18g0280 385 SUPERFAMILY Heme-dependent peroxidases 92 354 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi18g0280 385 Gene3D Peroxidase, domain 2 223 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0280 Vvi-Chr18 2761290 2771892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0280 177 354 Peroxidase AT4G17690 34.536 8.65e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0280 K00434 - vvi:100254009 727.243