Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0279 ATGGGAGTTACTCCAATTAAATTAAATTTCTGTATATTTTTTGTTAATATTATTATTATTATAAAATATAAGATTTTGTTGGTTTGTTTAATTTTTCAAAGAGAGGGAAAGAGACTGCTTATCGATCTCATCGTCGTCTTCCCCAGAAGCTCTATATCGAAGAGCAGTTGTTGCGGGAGGAAGTCGTCAATGGCGGAAGATAGTGAGACGAAGAAGGTGTTCGACGCTGAAGCAGCGGCTTCGCTAATGAAGGAGCTGAGAGGAACCTACGCTTCTGGAAAAACAAGGAGCTATGAGTGGAGAGTGGCGCAGTTGAAGAATCTGATGAAGATCGTCGATGATCACGAGAAAGATATCCTCGACGCTATTCGTGCTGACCTTTCCAAGCCCGAGCAAGAATCCTACATCGCCGAGATTTCTATAATAAAGTCATCCTGTACGCGTGCACTTGGGGAATTAAATCGATGGATGAAACCAGAAAAGGTTAAAACTTCAATAACAACTTTTCCTTCATCAGCAGAAATAGTGTCAGAACCATTGGGTGTAGTATTGATCATTGGAGCATGGAATTTTCCTTTGTTGTTAGCTCTTGATCCAGCCATTGGAGCTATTGCAGCTGGTAATGCTGTGGTTTTGAAACCATCAGAACTTTGTCCTGCCACTTCCTCATTGATTGCCAAACTTGTTGGGAAATATTTGGATAGCTCTTGCATAAAAGTTGTTGAGGGGGCTGTGGCTGAAACATCTGCATTACTGGAGCAAAAGTGGGACAAAATATTCTTTACAGGTAGTGGAAGAGTGGGACGAATTGTGATGGCAGCTGCTGCAAAGCACCTTACACCTGTAGCTTTGGAGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCTGTTGCAATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAAGCCTGCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGATAGATGCTCTGAAACATGAATTGGAGGCGTGGTATGGAAAGGATCCATTGGAATCAAAAGACTTGGCCCACATTGTGAATTCTAATCACTTTGCTCGCTTGGCGAAGCTCTTGGATGATGATAAGGTTTCGGGAAGTTTGCTCCCACCATCTTGCTGGATGTCCCAGAAGACTCTCTGGTCATGA 1194 0.428 MGVTPIKLNFCIFFVNIIIIIKYKILLVCLIFQREGKRLLIDLIVVFPRSSISKSSCCGRKSSMAEDSETKKVFDAEAAASLMKELRGTYASGKTRSYEWRVAQLKNLMKIVDDHEKDILDAIRADLSKPEQESYIAEISIIKSSCTRALGELNRWMKPEKVKTSITTFPSSAEIVSEPLGVVLIIGAWNFPLLLALDPAIGAIAAGNAVVLKPSELCPATSSLIAKLVGKYLDSSCIKVVEGAVAETSALLEQKWDKIFFTGSGRVGRIVMAAAAKHLTPVALELGGKCPVVVDSDINLPVAIRRIAGGKWASNNGQACIAPDYIVTTKDFAPKLIDALKHELEAWYGKDPLESKDLAHIVNSNHFARLAKLLDDDKVSGSLLPPSCWMSQKTLWS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0279 397 Pfam Aldehyde dehydrogenase family 84 381 IPR015590 GO:0016491
Vvi18g0279 397 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Vvi18g0279 397 PANTHER ALDEHYDE DEHYDROGENASE 77 379 IPR012394 GO:0006081
Vvi18g0279 397 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 88 287 IPR016162 GO:0016491
Vvi18g0279 397 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 379 IPR016163 GO:0016620
Vvi18g0279 397 FunFam Aldehyde dehydrogenase 87 291 - -
Vvi18g0279 397 SUPERFAMILY ALDH-like 84 379 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0279 Vvi-Chr18 2748042 2754460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0279 54 384 Aldehyde Dehydrogenase Gene Family AT4G34240 61.027 2.43e-139 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0279 K00128 - vvi:100248915 602.053