Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0276 ATGGCGGAGGCAGTCACAGTAATGGACATCGACGAGGAAGACAACCATTTGCTGAAAGCAAACAAGGGCAAGTCTGTCGTTGTCGGAGGTCCGCCGGATCGCAAAGCAACTCCGTGGGTAGAGAAGTACCGGCCACAGTCCCTTGCCGACGTTGCCGCTCATCGCGACATTGTCGATACCATCGATAGGCTCACGAGTGAGAATAGATTGCCCCATCTACTACTGTATGGACCTCCCGGTACGGGTAAAACCTCAACTATTCTCGCAGTCGCTCGCAAGCTGTACGGAGAACAGTTCCATAATATGATTCTCGAGTTGAATGCTTCCGATGATCGTGGGATAGATGTGGTGCGGCAGCAGATCCAAGATTTTGCTAGCACTCAGAGCTTCTCCTTTGGTGCAAAGTCGTCCGTGAAGTTGGTTCTATTGGATGAGGCAGATGCGATGACAAAGGATGCACAGTTTGCCTTGCGCCGGGTGATTGAGAAGTACACAAAGAACACTAGGTTTGCACTAATTTGTAATCACGTCAACAAGATTATTCCAGCGCTACAGTCAAGGTGTACTCGATTTCGGTTTGCCCCTCTTGATGCAGTTCATGTTACTGAGCGACTTAAACATGTTATAAATGCTGAAAAACTTGATGTATCTGAGAGTGGCTTAGCAGCACTTGTACGGCTGAGCAGTGGTGACATGAGAAAGGCTTTGAACATTTTGCAGTCAACACATATGGCTTCTCAGCAGATAACGGAGGAAGCTGTCTATCTGTGCACTGGAAATCCATTGCCTAAAGACATTGAGCAAATTTCTTACTGGCTGCTGAATGAATCATTTGCAGCTAGTTTTGATCGAATATCTGAAGTCAAGATGAGGAAAGGATTAGCCTTAGTAGATGTTGTAAGGGAGGTGACAATGTTTGTTTTCAAGATCAAAATGCCATCAGATGTTCGAGTTCAATTAATCAATGATTTAGCTGACATTGAGTACAGGTTGAGTTTTGGTTGCAATGATAAGTTGCAGCTTGGATCACTTATTGCTTCATTTACACGTGCTCGAGCAGCGTTGGTTGCTGCTGCAAAGTAG 1083 0.4571 MAEAVTVMDIDEEDNHLLKANKGKSVVVGGPPDRKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGEQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAASFDRISEVKMRKGLALVDVVREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSLIASFTRARAALVAAAK* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0276 360 CDD AAA 57 195 - -
Vvi18g0276 360 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 38 343 - -
Vvi18g0276 360 CDD HLD_clamp_RFC 196 258 - -
Vvi18g0276 360 Pfam ATPase family associated with various cellular activities (AAA) 73 193 IPR003959 GO:0005524|GO:0016887
Vvi18g0276 360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 254 IPR027417 -
Vvi18g0276 360 SUPERFAMILY post-AAA+ oligomerization domain-like 261 351 IPR008921 GO:0003677|GO:0006260
Vvi18g0276 360 FunFam Replication factor C subunit 5 198 260 - -
Vvi18g0276 360 Gene3D - 32 195 IPR027417 -
Vvi18g0276 360 Gene3D - 199 260 - -
Vvi18g0276 360 FunFam Replication factor C subunit 5 261 358 - -
Vvi18g0276 360 Pfam Replication factor C C-terminal domain 261 347 IPR013748 -
Vvi18g0276 360 FunFam Replication factor C subunit 5 31 196 - -
Vvi18g0276 360 Gene3D - 261 358 - -
Vvi18g0276 360 SMART AAA_5 69 199 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0276 Vvi-Chr18 2677372 2684290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0276 1 360 Core DNA Replication Machinery Family AT1G77470 78.378 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0276 K10756 - vvi:100266082 682.174