Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0275 ATGCGAATGTCAAAGTCTCCCTCCCCTGAACCACAGGAGCCCATATCCTCATCACCTTCTCGGCCTAGGGAATCCAATGGAATATCGGGAATGGATGATCCAGAGAGTACAATGTCAAGAGTTGCTCATTTTGTTGAGCAGCTACATGCCAACATGTCATCACCACATGAAAAAGAGCTTATTACAGCCCGTTTACTAGGTATTGCAAGAGCAAGAAAGGATGCAAGGACACTCATTGGTACCCATGTTCAAGCAATGCCATTGTTTATATCTGTTCTCAGGAGTGGCACTCCTGTGGCAAAAGTTAATGTGGCTGCCACTCTTAGTGTTTTGTGTAAAGATGAAGATCTACGACTAAAGGTGCTTCTAGGGGGTTGCATTCCACCATTACTTGCACTTTTAAAGTCTGAATCCACTGAAGCCAGGAAGGCTGCAGCAGAAGCTTTATATGAAGTTTCCTCTGGTGGACTGTCAGATGATCATGTGGGTATGAAAATATTTGTTACAGAAGGTGTGGTACCCAACTTATGGGACCAACTCAATCCAAAGAACAAGCAAGACAAAGTAGTGGAGGGGTTTGTTACTGGGGCTTTGAGGAATCTATGTGGTGACAAGAATGGGTATTGGAAAGCTACACTTGAGGCTGGAGGAGTAGATATTATTGTGGGGCTTCTTTATTCTGATAATGCTGCTGCACAATCCAATGCTGCTTCTCTCTTGGCACGTCTGATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGATTCTGGAGCTGTTAAGGCGTTGCTTCGACTCCTGGGTCAGGAAAATGATATTTCTGTCCGTGCCAGTGCTGCTGATGCTTTGGAGGCTCTTTCTTCAAAGTCAACCAGAGCTAAGAAAGCTGTTGTGGATGCAGATGGTGTGCCAGTTCTCATTGGGGCTATAGTTGCTCCATCTAAAGAGTGCATGCAAGGGGAGTGTGGCCAAGCTCTACAGGGGCATGCAACACGAGCTCTAGCGAACATCTGCGGTGGGATGTCTGCTTTAATAATGTATCTTGGAGAACTTTCCCAATCCCCCCGATTAGCTGCACCAGTTGCTGATATAATTGGAGCTCTTGCCTATTCTCTAATGGTATTTGAGCAGCAATCTGGTGTTGAAGAAGAACCTTTTGATGTGACTCAGATTGAAGATATTCTAGTAATGCTACTAAAGCCCCGGGACAATAAGCTGGTTCAGGAGCGAGTTCTAGAGGCTCTGGCCAGCCTGTATAGTAACAAATATCTCTCAAGATGGATCAATCATGCTGAAGCAAAGAAAGTGCTCATTGCACTCATAACAATGGCTGCTGCTGATGCACAAGAGTATCTCATACTCGCTTTGACGAGCTTATGCTGTGATGGGGTGGGGCTCTGGGAAGCAATTGGAATGAGGGAAGGAATTCAGTTACTCATATCATTACTGGGCTTATCCAGTGAACAGCATCAAGAGTATGCTGTTCAGTTGCTGGCAATCTTGACTGACCAGGTTGATGACAGCAAGTGGGCTATCACTGCTGCTGGTGGGATTCCTCCTCTGGTGCAGCTACTAGAGATTGGATCTCAGAAGGCAAGGGAGGATGCAGCACATGTTTTGTGGAATTTGTGCTGTCACAGTGAAGACATCCGTGCCTGTGTTGAGAGTGCAGGAGCTGTCCCAGCATTCTTATGGCTCCTAAAAAGTGGTGGATTGAAAGGACAAGAAGCCTCAGCTATGGCTCTCGGAAAGCTTGTTCGCACAGCTGATTCTGCCACCATTAACCAATTATTAGCATTGCTCCTGGGAGATTCTCCAAGCTCTAAGGCCCACATAATCAGAGTTTTGGGTCATGTACTGACAATGGCATCACATGAAGATCTAGTGCATAAGGGTTCTGCTGCCAATAAAGGGCTGACATCTCTTGTCCAGGTTCTCAACTCCTCAAATGAAGAAACCCAAGAGTATGCAGCTTCTGTGTTGGCCGATCTATTCAGCACTAGACAAGATATCTGTGATAGTCTTGCAACTGATGAGATTGTGCATCCTTGCATGAAGCTTTTGACCAGTAAAACCCAAGTTATTGCAACTCAATCAGCTAGAGCCTTAGGTGCTCTCTCACGTCCAACCAAGGCTAAGGCTACAAACAAGATGTCCTATATTGCAGAGGGAGATGTCAAGCCTCTAATAAAGTTGGCTAAAACTTCTTCCATTGATGCTGCTGAGACTGCAGTTGCTGCATTGGCTAATCTTCTGTCTGATCCCCAGATTGCTGCAGAAGCCCTTGAAGAAGATGTTGTTTCAGCTTTGACAAGAGTATTGGGAGAAGGCACTTCAGAAGGTAAGAAGAATGCGTCACGTGCTCTTCATCAATTACTGAAGCATTTTCCAGTAGGTGATGTGCTCACAGGAAATGCTCAGTGCCGTTTTGCTGTTCTCGCACTTGTGGATTCCTTAAATTCAATGGATTTGGATGGGACTGATGCTGCTGATGCTTTAGAAGTGGTTGCACTCTTGGCTAGGATGAAGCAGAGTGTGAACTTCACTTATTCTCCGTGGTCTGCTCTTGCTGAAGTCCCCTCAAGCTTGGAGTCCCTTGTGCGCTGCCTGGCTGAGGGACCTCCTCTGGTGCAAGATAAGGCAATAGAAATTCTATCTAGGCTTTGTGGGGATCAACCAGTTGTGCTTGGTGATCTTTTGGTTGCACAATCAAGATCCATTGGTTCACTTGCTAATAGAATAATGAATTCATCCAGTTTAGAAGTAAGAGTTGGAGGAACTGCCTTACTCATTTGTGCTGCGAAGGAACATAAACAGGCTGCAATGGATGCACTTGATGTATCAGGATATTTAAGACCTCTTATATATGCTTTGGTTGATATGATGAAGCAGAATTCTAGTTGTTCCTCTCTAGAAATTGAAGTGAGAACTCCTAGAGGATTTATGGAAAGAACTGCGTTTCAGGAAGGGATTGAGTTTGAGGTTCCTGACCCAGCCACTGTCTTGGGGGGCACTGTTGCCTTGTGGTTGATATCAATAATTTGTTCGTTTCATGCAAAGAGCAAAATCACTGTGATGGAAGCTGGTGGACTTGAGGCCCTCTCTGAGAAGCTTACAAGTTATGCTTCCAATCCACAGGCAGAGTTTGAGGATACTGAGGGTATATGGATTAGTGCTTTGCTCCTGGCTATTTTGTTCCAAGATGCAAATGTTGTTCTGGCCCCTGCAACCATGCGCATCATACCGTCACTTGCACTTTTAATGAAATCTGATGAAGTGATTGACAGATTCTTTGCTGCCCAGGCAATGGCTAGTCTTGTTTGTAATGGAAGTAGGGGAATAAATCTTACAATTGCAAATTCAGGTGCAGTTGCTGGGTTAATAACCCTAATTGGTTACATAGAATTAGATATGCCAAACCTTGTTGCTTTATCTGAAGAGTTTTGTCTGGTTAGGAAACCTGATCAAGTTGTTCTGGAAAATCTTTTTGAAATTGAAGACATAAGAGTTGGTTCCACTGCTCGCAAATCTATACCTCTATTAGTGGATCTTTTGAGACCAATTCCAGATAGGCCAGGTGCCCCTCCAATTGCTGTTCAACTATTGACTCGTATTGCAGATGGAAGTGATACAAACAAACTGATAATGGCTGAAGCTGGAGCATTGGATGCTCTAACCAAGTACTTGTCTTTGAGCCCTCAAGACTCTTCTGAGGCCTCAGTGTCTGAACTGTTGAGAATACTATTTAGCAATCCTGATCTTCTTCGTTACGAAGCATCAATCAGTTCCTTGAATCAACTAATAGCTGTGCTGCGTTTGGGGTCAAGAAATGCTAGATTCAGTGCTGCTAGAGCTTTGCATGAGCTTTTCGATGCTGAGAACATCAGAGATTCTGAGTTAGCTAGGCAGGCGGTTCAGCCCTTGGTTGACATGCTTAATGCTGCATCAGAGAGTGAGCAACAAGCTGCTCTTGTTGCCTTGATCAAGTTGACTATGGGAAATTCATCAAAAGCATCTTTGATGACAGACGTGGAGGGAAACCCCCTTGAGAGTCTTTACAAAATTTTATCATCTTCTACTTCATCCTTGGAACTAAAGGGAAATGCTGCACAACTTTGCTTTGTTTTGTTTAATATTCCAAAAATTCGAGCATTGCCGATGGCCTCTGAATGCATAGAACCCCTTATATTGTTGATGCAATCTGAGAGCAGCACAGCTGTAGAATCCAGCGTTTGTGCTTTTGAGAGATTGTTGGATGATGAACAACTAGTGGAGCTTGCAGCAGCTTATGATATTGTGGATCTCATTGTTAGCTTGGTTTCTGGATCAAACCATCAGCTCATTGAGACTTCCATTTGTGCTCTCACAAAGTTGGGGAAGGACCGAACTCCCCTCAAGTTAGATATGGTCAAAGCTGGCATTATTGATAATTGTCTTGAGCTACTCCCTGTTGCACCCAGTTCATTATGCTCCTCAATTGCGGAACTGTTCCGCATCTTAACAAATAGCAGTGCAATTTCTAAAGGCTCAGCTGCTGCAAGAATTGTGGAACCCCTTTTCATGGTCTTGCTTCGTCCAGATTTCAGTATGTGGGGACAGCATAGTGCTTTGCAAGCTCTTGTAAATATTTTGGAGAAACCACAAAGCCTTGCAACACTAAAACTTACTCCTAGCCAAGTCATTGAACCACTGATTTCATTTTTAGAGTCCCCATCTCAAGCAATCCAGCAGCTAGGCACAGAATTGCTATCTCATCTTCTTGCACAGGAACATTTTCAGCAGGATATTACAACAAAAAATGCAGTTGTACCACTTGTTCAGCTTGCAGGAATTGGAATATTGAACTTACAGCAGACAGCAATCAAGGCATTGGAGAACATCTCTATAAGCTGGCCAAAGGCAGTTGCAGATGCTGGGGGCATTTTTGAGCTTGCAAAAGTTATCATTCAAGATGACCCGCAACCACCTCATGCTTTGTGGGAATCAGCTGCACTGGTTCTCTCTAATGTTCTGCGTTTCAATGCTGAGTACTATTTCAAAGTTCCTCTTGTTGTTCTCGTGAAAATGCTGCATTCAACACTGGAGAGCACTATTACGGTGGCTCTTAATGCCCTGATTGTTCATGAAAGGAGTGATTCGTCAAATGCTGAACAGATGACTGAAGCTGGTGCCATTGATGCTTTGCTGGACCTTCTGAGATCTCATCAGTGTGAAGAGCCTGCTGGAAGATTACTTGAGGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAAGTCTCCAAGTATGCAATAGCACCTTTATCACAGTATCTGTTAGATCCACAAACCAGATCACAATCTGGTAGGCTTCTTGCAGCTCTTGCTCTTGGTGACCTCTCCCAGCATGAAGGACTTGCTAGAGCCAGTGATTCTGTATCAGCATGCCGTGCACTGATAAGCTTGCTTGAAGATCAACCAACAGAAGAAATGAAAATGGTGGCAATTTGTGCATTGCAGAACTTTGTGATGCGCAGTAGAACTAATAGGCGAGCTGTTGCTGAAGCAGGTGGCATATTGGTAGTTCAGGAACTACTACTTTCTCCTAATTCAGATGTTGCTGCGCAGGCAGCATTGCTGATCAAATTTTTATTTTCCAATCACACGCTTCAAGAATATGTGTCAAATGAGCTCATCAGATCATTGACAGCTGCATTAGAGAAGGAGTTGTGGTCCACAGCAACCATCAATGAAGAGGTCCTGAGAACCATAAATGTGATATTTGCCAATTTTCATAAGCTCCATATTTCTGAAGCAGCTACCCTGTGCATTCCCCATTTGGTAGGAGCGCTCAAGTCTGGAAGTGATGCTGCTCAGGAATCTGTCTTGGACACCTTATGCTTGTTAAAACATTCATGGTCAACCATGCCAATAGATATTGCCAAATCTCAAGCCATGATTGCAGCTGAAGCCATTCCCATTCTGCAAATGCTTATGAAAACCTGTCCACCAAGCTTCCACGATAAAGCAGATAGCCTCTTGCATTGTTTACCAGGGTGTTTGACTGTTACCATTAAGCGTGGGAACAACCTAAAGCAGGCCATGGGGGGAACAAATGCTTTCTGCCGATTGACAATAGGCAATGGTCCTCCACGGCAAACCAAGGTAGTGAGCCACAGTACATCCCCAGAATGGAAAGAAGGATTTACATGGGCATTTGATGTACCACCGAAGGGACAAAAGCTCCACATTCTATGTAAAAGCAAAAGTACTTTTGGAAAGACAAATCTTGGGAGAGTGACCATCCAAATCGACAAAGTTGTCACGGAAGGTGTATACAGCGGATTGTTCAGCCTGAACCATGACAGCAACAAAGATGGGTCTTCCCGAACACTAGAAATCGAGATTATCTGGTCCAACAGGATATCAAATGAGAGCATGTGA 6420 0.4411 MRMSKSPSPEPQEPISSSPSRPRESNGISGMDDPESTMSRVAHFVEQLHANMSSPHEKELITARLLGIARARKDARTLIGTHVQAMPLFISVLRSGTPVAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLALLKSESTEARKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPNLWDQLNPKNKQDKVVEGFVTGALRNLCGDKNGYWKATLEAGGVDIIVGLLYSDNAAAQSNAASLLARLMLAFSDSIPKVIDSGAVKALLRLLGQENDISVRASAADALEALSSKSTRAKKAVVDADGVPVLIGAIVAPSKECMQGECGQALQGHATRALANICGGMSALIMYLGELSQSPRLAAPVADIIGALAYSLMVFEQQSGVEEEPFDVTQIEDILVMLLKPRDNKLVQERVLEALASLYSNKYLSRWINHAEAKKVLIALITMAAADAQEYLILALTSLCCDGVGLWEAIGMREGIQLLISLLGLSSEQHQEYAVQLLAILTDQVDDSKWAITAAGGIPPLVQLLEIGSQKAREDAAHVLWNLCCHSEDIRACVESAGAVPAFLWLLKSGGLKGQEASAMALGKLVRTADSATINQLLALLLGDSPSSKAHIIRVLGHVLTMASHEDLVHKGSAANKGLTSLVQVLNSSNEETQEYAASVLADLFSTRQDICDSLATDEIVHPCMKLLTSKTQVIATQSARALGALSRPTKAKATNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPQIAAEALEEDVVSALTRVLGEGTSEGKKNASRALHQLLKHFPVGDVLTGNAQCRFAVLALVDSLNSMDLDGTDAADALEVVALLARMKQSVNFTYSPWSALAEVPSSLESLVRCLAEGPPLVQDKAIEILSRLCGDQPVVLGDLLVAQSRSIGSLANRIMNSSSLEVRVGGTALLICAAKEHKQAAMDALDVSGYLRPLIYALVDMMKQNSSCSSLEIEVRTPRGFMERTAFQEGIEFEVPDPATVLGGTVALWLISIICSFHAKSKITVMEAGGLEALSEKLTSYASNPQAEFEDTEGIWISALLLAILFQDANVVLAPATMRIIPSLALLMKSDEVIDRFFAAQAMASLVCNGSRGINLTIANSGAVAGLITLIGYIELDMPNLVALSEEFCLVRKPDQVVLENLFEIEDIRVGSTARKSIPLLVDLLRPIPDRPGAPPIAVQLLTRIADGSDTNKLIMAEAGALDALTKYLSLSPQDSSEASVSELLRILFSNPDLLRYEASISSLNQLIAVLRLGSRNARFSAARALHELFDAENIRDSELARQAVQPLVDMLNAASESEQQAALVALIKLTMGNSSKASLMTDVEGNPLESLYKILSSSTSSLELKGNAAQLCFVLFNIPKIRALPMASECIEPLILLMQSESSTAVESSVCAFERLLDDEQLVELAAAYDIVDLIVSLVSGSNHQLIETSICALTKLGKDRTPLKLDMVKAGIIDNCLELLPVAPSSLCSSIAELFRILTNSSAISKGSAAARIVEPLFMVLLRPDFSMWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALENISISWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRFNAEYYFKVPLVVLVKMLHSTLESTITVALNALIVHERSDSSNAEQMTEAGAIDALLDLLRSHQCEEPAGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGRLLAALALGDLSQHEGLARASDSVSACRALISLLEDQPTEEMKMVAICALQNFVMRSRTNRRAVAEAGGILVVQELLLSPNSDVAAQAALLIKFLFSNHTLQEYVSNELIRSLTAALEKELWSTATINEEVLRTINVIFANFHKLHISEAATLCIPHLVGALKSGSDAAQESVLDTLCLLKHSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHDKADSLLHCLPGCLTVTIKRGNNLKQAMGGTNAFCRLTIGNGPPRQTKVVSHSTSPEWKEGFTWAFDVPPKGQKLHILCKSKSTFGKTNLGRVTIQIDKVVTEGVYSGLFSLNHDSNKDGSSRTLEIEIIWSNRISNESM* 2140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0275 2139 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2010 2116 IPR035892 -
Vvi18g0275 2139 SUPERFAMILY ARM repeat 122 599 IPR016024 -
Vvi18g0275 2139 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 258 302 IPR000225 GO:0005515
Vvi18g0275 2139 Pfam Armadillo/beta-catenin-like repeat 509 544 IPR000225 GO:0005515
Vvi18g0275 2139 Pfam C2 domain 2012 2111 IPR000008 -
Vvi18g0275 2139 SUPERFAMILY ARM repeat 1561 1923 IPR016024 -
Vvi18g0275 2139 MobiDBLite consensus disorder prediction 1 33 - -
Vvi18g0275 2139 Gene3D - 160 370 IPR011989 -
Vvi18g0275 2139 Gene3D - 40 159 IPR011989 -
Vvi18g0275 2139 SUPERFAMILY ARM repeat 1007 1131 IPR016024 -
Vvi18g0275 2139 Gene3D - 1801 2009 IPR011989 -
Vvi18g0275 2139 Gene3D - 629 842 IPR011989 -
Vvi18g0275 2139 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 8 2133 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vvi18g0275 2139 SMART C2_3c 2012 2108 IPR000008 -
Vvi18g0275 2139 Gene3D - 1593 1800 IPR011989 -
Vvi18g0275 2139 Gene3D - 857 1339 IPR011989 -
Vvi18g0275 2139 CDD C2 2013 2103 - -
Vvi18g0275 2139 ProSiteProfiles C2 domain profile. 1992 2109 IPR000008 -
Vvi18g0275 2139 Gene3D - 1344 1592 IPR011989 -
Vvi18g0275 2139 SMART arm_5 114 154 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 713 753 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 1419 1460 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 205 245 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 1589 1629 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 290 339 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 625 666 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 247 288 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 1924 1963 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 1838 1878 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 754 794 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 505 545 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 1547 1588 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 1291 1332 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 1209 1249 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 1462 1502 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 461 503 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 547 587 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 1712 1750 IPR000225 GO:0005515
Vvi18g0275 2139 SMART arm_5 668 708 IPR000225 GO:0005515
Vvi18g0275 2139 Gene3D - 372 628 IPR011989 -
Vvi18g0275 2139 Gene3D C2 domain 2011 2138 IPR035892 -
Vvi18g0275 2139 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Vvi18g0275 2139 SUPERFAMILY ARM repeat 1196 1549 IPR016024 -
Vvi18g0275 2139 MobiDBLite consensus disorder prediction 1 35 - -
Vvi18g0275 2139 SUPERFAMILY ARM repeat 638 964 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0275 Vvi-Chr18 2664009 2675106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0275 476 792 U-box Gene Family AT3G46510 25.000 1.09e-09 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0275 - - vvi:100260874 3995.28