Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0274 ATGACAGCGGAGTTGCAGTTACCTCCAGGCTTCAGGTTCCATCCGACGGATGAGGAGCTTGTGATGCACTATCTGTGCCGTAAATGTGCATCGCAATCGATCGCCGTGCCGATCATTGCCGAAATTGATCTCTACAAATTCGATCCCTGGCAGCTTCCTGAGATGGCCTTGTACGGAGAGAAAGAGTGGTACTTCTTTTCGCCGAGAGATCGGAAATATCCGAACGGTTCAAGGCCGAACCGGGCAGCGGGAACAGGGTACTGGAAGGCCACCGGAGCGGATAAGCCTATTGGGCATCCGAAGCCGGTTGGGATTAAGAAGGCTTTGGTTTTTTATGCCGGAAAAGCCCCCAGGGGAGAGAAGACAAATTGGATTATGCATGAATACCGGCTGGCAGACGTGGACCGGTCGGCTCGCAAGAAGAATAATAGCTTAAGGTTGGACGATTGGGTTCTGTGCCGCATATACAACAAGAAGGGCATTGTCGAGAAACAACACACCGCTGCCCGGAAATCAGATTGCTCCGATGTTGAGGATCAAAAGCCTGGACCTCTTGCTCTAAGCAGGAAGGTAGGTGCGATGCCTCCACCTCCGCCGCCATCGTCCTCTACGGCACCAACTGCGACAGCGGCACTGGACGATTTGGTGTACTTCGACTCATCGGATTCGGTGCCGCGCCTCCACACCGACTCGAGCTGTTCGGAGCACGTGGTGTCGCCGGAGTTCACGTGCGAGAGGGAGGTGCAGAGCGAGCCCAAGTGGAAGGAGTGGGAAAATCCCATGGACTTTTCGTACAATTACATGGATGCCACAGTTGACAACGCATTTTTGTCTCAGTTCCCGAATAATCAGATGTCGCCATTGCAGGACATGTTCATGTACCTGCAGAAGCCCTTCTGA 900 0.5344 MTAELQLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGHPKPVGIKKALVFYAGKAPRGEKTNWIMHEYRLADVDRSARKKNNSLRLDDWVLCRIYNKKGIVEKQHTAARKSDCSDVEDQKPGPLALSRKVGAMPPPPPPSSSTAPTATAALDDLVYFDSSDSVPRLHTDSSCSEHVVSPEFTCEREVQSEPKWKEWENPMDFSYNYMDATVDNAFLSQFPNNQMSPLQDMFMYLQKPF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0274 299 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Vvi18g0274 299 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Vvi18g0274 299 MobiDBLite consensus disorder prediction 167 207 - -
Vvi18g0274 299 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Vvi18g0274 299 FunFam NAC transcription factor 16 162 - -
Vvi18g0274 299 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Vvi18g0274 299 PANTHER NAC TRANSCRIPTION FACTOR 56 7 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0274 Vvi-Chr18 2643285 2644854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0274 1 299 NAC Transcription Factor Family AT1G01720 71.010 8.64e-156 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi18g0274 NAM 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0274 - - vvi:100255807 604.749