Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g0273 | ATGGACAGTGATGATGAGGAGACCAAAAGGGCATCCAGGAGTGTGGCCTTCACCCAACTCAACCAAGTCGCCTCCGATTTCGCCCTTGCAATAGCCCTGCAAGAGCAAGAGAGGAGGGCCTTCACAACTCTCCTCCCTACGATATTCCAAACCAACAGTGATGAGCTCGAAAGCGATTCCTCAGATGAAACCGACGATGACGAGGACGAGGACAGCGATGATGACAGCCATGACTTCTTCCCCAACAGCCATGAAACGGAAGAGGGGCTAGAGTTCTTGGAGGGAGAAGGCAGCAACAGCGATCAAGACATGGAGGAGGACGACATCGACCCGGACCAACTTTCTTACGAGGAGTTGATTGCCTTAGGAGAGATTGTTGGAGAAGAGAGTAGAGGATTATCAATGGAGGAAATCTCCGCTTCCCTGCGTCCTTACACTTGCCATTCTCTCCGCTCCAAAACTGCGGTAGATCGATGTGTGATTTGCCAAGTTGAGTATGAAGAAGAAGAGAAGCTCGTGGCTCTTCCCTGTGAACATCCATACCATGCAGATTGCATAACCAAGTGGCTTCAGATTAAGAAGACATGCCCAATATGCAGCACCGAGGTTTCATCATTGCCCTAG | 624 | 0.5032 | MDSDDEETKRASRSVAFTQLNQVASDFALAIALQEQERRAFTTLLPTIFQTNSDELESDSSDETDDDEDEDSDDDSHDFFPNSHETEEGLEFLEGEGSNSDQDMEEDDIDPDQLSYEELIALGEIVGEESRGLSMEEISASLRPYTCHSLRSKTAVDRCVICQVEYEEEEKLVALPCEHPYHADCITKWLQIKKTCPICSTEVSSLP* | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0273 | 207 | ProSiteProfiles | Zinc finger RING-type profile. | 159 | 200 | IPR001841 | - | |
| Vvi18g0273 | 207 | SMART | ring_2 | 159 | 199 | IPR001841 | - | |
| Vvi18g0273 | 207 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED | 5 | 88 | IPR043312 | - | |
| Vvi18g0273 | 207 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 206 | IPR013083 | - | |
| Vvi18g0273 | 207 | MobiDBLite | consensus disorder prediction | 49 | 89 | - | - | |
| Vvi18g0273 | 207 | SUPERFAMILY | RING/U-box | 158 | 204 | - | - | |
| Vvi18g0273 | 207 | FunFam | E3 ubiquitin ligase BIG BROTHER-related | 125 | 206 | - | - | |
| Vvi18g0273 | 207 | Pfam | Ring finger domain | 158 | 199 | IPR001841 | - | |
| Vvi18g0273 | 207 | MobiDBLite | consensus disorder prediction | 56 | 76 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g0273 | Vvi-Chr18 | 2629486 | 2630109 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0273 | 100 | 207 | C3H Transcription Factor Family | AT3G63530 | 51.818 | 6.38e-33 | 117 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g0273 | K19045 | - | pop:7466450 | 213.386 |