Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0266 ATGAGTAGTGTGTTAAACCTGGAACTTGATTTCATTGAACAGGTCGATGTAATGCTATGCACAGATTGCTTCTATGAAGGGAGGTTTGTAACTGGTCATTCAAGTATAGATTTTATACGGTTGGATTCCACAAAAGATTATGGTGACATTGATAGCGAAAGTTGGAGTGATCAGGAGACTTTACTCCTGCTTGAAGCAATGGAATCTTATAATGAGAACTGGAATGACATTGCAGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATCCTTCATTTTATTCGTATGCCCATGGAGGATGGCCTACTTGAGAATATTGAAGTTCCAAGCATGCCAACTTTATCTAATTCTTTGAATAAAGTTGATCAGGAAAGATCACATTCAAATTCAAATGGGAATTTAGCAGGATCTTGTCTCCCTGGCCTTGATTCTGATAGTAGGCTCCCTTTTGCAAATTCTGGAAATCCAGTTATGTCCATGGTTGCCTTTCTAGCCACCGCTGTTGGACCACGAGTTGCCGCAGCCTGTGCCCATGCATCCTTGATAGCATTGTCTGAGGAAAACGCTTTAGCTGCTGCTTCTGGATTCATCATACCGCCGGAAGGATCTGGACATGGAAATAGGATGAAAGAAGGTGGTCCACATGGAGAGCTGACAAATTCAAGTCAGCACCAAGATGGAAACATAGCAATACAAGGCTCATGGGGTCAAAATGATGCAGAGGTTGCTTCATTACCTGTTGAAAAAGTTAGAGCTGCTGCAAAAGCTGGTCTTGCTGCAGCAGCGATGAAGGCAAAACTGTTTGCTGATCATGAAGAAAGGGAAATTCAGAGGCTTTCTGCCAATATTATTAATCATCAGTTGAAGAGATTAGAGCTGAAGCTGAAGCAATTTGCAGAAGTGGAAACCTTGTTGATGAAAGAATGTGAACAGGTGGAGAGGGCAAGACAAAGGTTTGCGGCTGAGCGAGCCCGCATTATATCGACCCGGTTTGGACCAACCGGAGTCACTTCACCTATGAATCTTCCAGGTGTTGCTCCTGCTTTGGTTAGTAACAACACTGGCAACAATAGGCAACAAATCATATCAGCCTCACCTTCACAGCCAAGCATTTCTGGGTACGGTAATAACCAACAAATGCATCCACACATGTCGTTCATGCCGCGGCAGCCTATGTTTTCATTTGGACCACGCCTGCCCCTTGCAGCCATACAGCCATCCTCATCAACTCCTTCTCCAAATGCCATGTTTAACAATTCGGGTAATTCACAGCCTACTCTCAATCATCCAATGATGAGGCCTGTATCAGGGACTAGCTCTGGTTTAGGTTGA 1332 0.4399 MSSVLNLELDFIEQVDVMLCTDCFYEGRFVTGHSSIDFIRLDSTKDYGDIDSESWSDQETLLLLEAMESYNENWNDIAEHVGTKSKAQCILHFIRMPMEDGLLENIEVPSMPTLSNSLNKVDQERSHSNSNGNLAGSCLPGLDSDSRLPFANSGNPVMSMVAFLATAVGPRVAAACAHASLIALSEENALAAASGFIIPPEGSGHGNRMKEGGPHGELTNSSQHQDGNIAIQGSWGQNDAEVASLPVEKVRAAAKAGLAAAAMKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMKECEQVERARQRFAAERARIISTRFGPTGVTSPMNLPGVAPALVSNNTGNNRQQIISASPSQPSISGYGNNQQMHPHMSFMPRQPMFSFGPRLPLAAIQPSSSTPSPNAMFNNSGNSQPTLNHPMMRPVSGTSSGLG* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0266 443 Pfam SWIRM-associated region 1 256 329 IPR032451 -
Vvi18g0266 443 Pfam Myb-like DNA-binding domain 53 94 IPR001005 -
Vvi18g0266 443 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Vvi18g0266 443 MobiDBLite consensus disorder prediction 403 443 - -
Vvi18g0266 443 CDD SANT 54 96 IPR001005 -
Vvi18g0266 443 SMART sant 51 99 IPR001005 -
Vvi18g0266 443 ProSiteProfiles SANT domain profile. 50 101 IPR017884 -
Vvi18g0266 443 PANTHER SWI/SNF COMPLEX-RELATED 52 327 - -
Vvi18g0266 443 MobiDBLite consensus disorder prediction 119 137 - -
Vvi18g0266 443 FunFam SWI/SNF complex subunit SMARCC2 isoform C 51 101 - -
Vvi18g0266 443 SUPERFAMILY Homeodomain-like 52 103 IPR009057 -
Vvi18g0266 443 Coils Coil 269 289 - -
Vvi18g0266 443 MobiDBLite consensus disorder prediction 119 138 - -
Vvi18g0266 443 Gene3D - 51 101 - -
Vvi18g0266 443 MobiDBLite consensus disorder prediction 402 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0266 Vvi-Chr18 2543769 2554330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0266 15 124 EF-hand Containing Proteins AT3G07740 29.661 9.62e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi18g0266 SWIRM-assoc_1 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0266 K11649 - vvi:100253973 815.453