Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0265 ATGCTAAAAGAGTCAAATCAAATTTTTATTTCAAATAAACCCGGATGGAGAAACTTTCTGGCGTTCGTTGGCCCTGGTTTTCTCGTCTCATTGGCTTATCTCGACCCAGGAAATTTGGAAACTGATCTACAGGCAGGATCCAATCATGGATACGAGCTGCTGTGGGTGGTGCTCATCGGATTGATATTCGCCCTCGTAATCCAATCACTTGCCGCAAATTTGGGTGTGATCACAGGGACAGCCTTTGCATTGAATATACTTTTCAAAGTACCAGTATGGGCTGGAGTGCTCTTCACAGGTTTGAGCACCCTCTTGCTTCTTGGCCTCCAGAGATACGGGGTGAGGAAGTTGGAGATGTTGATAGCAGGGCTGGTATTCATAATGGCAGGGTGCTTCTTTGCCGAAATGAGTTATGTGAAGCCTCCGGCTTCAAGGGTGATAAAGGGCATGTTAATCCCCAAACTCAAAGGTTCGACCGCCACCACTGATGCCATTGCGCTTTTCGGTGCTCTCGTCATGCCTCACAACCTCTTTCTCCATTCTGCCCTTGTACTCTCTAGAAAGGTGCCCAATTCAGTCCGTGGCGTCAATGAAGCATGTCGATATTTCTTGATAGAGAGTGGAATGGCATTGATGGTAGCATTTTGTATCAATGTTGCAGTTGTTTCTGTGTCAGGCACTATTTGCTCTGTAAACAATCTTTCAAGAGAAAACATGGATCAATGCAGTGATCTCAATCTTAATTCTGCTTCTTTTCTTCTCAAGAATGTGTTGGGAGGGTCAAGCAAGGTGGTCTATGCTATTGCATTGTTTGCCTCAGGCCAAAGTTCCACCATCACAGGCACTTATGCTGGACAATATATCATGCAGGGTTTCTTGAATCTTAAGATGAAGAGATGGCTAAGGAACCTAATGACTAGGTGCATTGCCATTACACCTAGCCTCATTGTCTCCATTATTAGTGGATCTGCTGGGGCTGGCCGACTCATTATCATTGCATCAATGATACTGTCATTTGAACTTCCATTTGCTCTAATCCCACTCCTGAAATTCAGTAGCAGTAGCACCAAGATGGGCCCTCACAAGAATTCAATATATGTTATAGTGTTCTCATGGATATTGGGATTTGGACTGATGGGCATCAACATTTACTACTTAGCCACAGGCTTTGTGAATTGGCTACTCCATAATGATCTTCCCAAGGTGGGAAATGTGTTTATTGGGATCATAGTGTTTCCTCTCATGGCAGTCTATGTCCTTGCAGTCCTCTATCTCACCTTTCGAAAAGACACTGTGGTGACCTTCATTGAAGCAGAGAAGGATGAGCACAGTGCCCGAACCCATGTGGAAAAAAAACTTGAAGCAGAGAAGTATGATCAGAGTGCCCGAACCCATGTGGAAAAAAAGCTTGACAATTCCAATCATACGTTTGAATTAAGCCATCTACACAGAGAGGATCTTATCGACATCCATCTACCAAATTAA 1485 0.4404 MLKESNQIFISNKPGWRNFLAFVGPGFLVSLAYLDPGNLETDLQAGSNHGYELLWVVLIGLIFALVIQSLAANLGVITGTAFALNILFKVPVWAGVLFTGLSTLLLLGLQRYGVRKLEMLIAGLVFIMAGCFFAEMSYVKPPASRVIKGMLIPKLKGSTATTDAIALFGALVMPHNLFLHSALVLSRKVPNSVRGVNEACRYFLIESGMALMVAFCINVAVVSVSGTICSVNNLSRENMDQCSDLNLNSASFLLKNVLGGSSKVVYAIALFASGQSSTITGTYAGQYIMQGFLNLKMKRWLRNLMTRCIAITPSLIVSIISGSAGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIYVIVFSWILGFGLMGINIYYLATGFVNWLLHNDLPKVGNVFIGIIVFPLMAVYVLAVLYLTFRKDTVVTFIEAEKDEHSARTHVEKKLEAEKYDQSARTHVEKKLDNSNHTFELSHLHREDLIDIHLPN* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0265 494 Hamap Divalent metal cation transporter MntH [mntH]. 10 390 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0265 494 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 78 442 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0265 494 Pfam Natural resistance-associated macrophage protein 78 364 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0265 494 NCBIfam Nramp family divalent metal transporter 78 353 - -
Vvi18g0265 494 PRINTS Natural resistance-associated macrophage protein signature 274 293 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0265 494 PRINTS Natural resistance-associated macrophage protein signature 302 319 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0265 494 PRINTS Natural resistance-associated macrophage protein signature 334 353 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0265 494 PRINTS Natural resistance-associated macrophage protein signature 89 108 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0265 494 PRINTS Natural resistance-associated macrophage protein signature 164 187 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0265 494 PRINTS Natural resistance-associated macrophage protein signature 61 87 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0265 494 PRINTS Natural resistance-associated macrophage protein signature 114 135 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0265 Vvi-Chr18 2521402 2529629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0265 3 447 Inorganic Solute Cotransporters AT1G80830 57.676 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0265 K21398 - vvi:100248879 896.73