Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0261 ATGGCACCAGTGTTGCAGAGCTCTCAGCCATGGGTGGAAAAATATCGCCCGAAGCAAGTGAAGGACGTAGCTCACCAGGACGAGGTGGTTCGAGTGCTTACCAACACCCTTGAGACCACAAATTGCCCGCACATGCTATTCTATGGGCCGCCCGGTACCGGAAAAACCACCACTGCGCTTGCCATTGCTCATCAGCTTTTCGGACCTGAACTCTACAAGTCGAGGGTGCTTGAACTGAATGCAAGTGATGACCGTGGGATCAATGTAGTTCGTACAAAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTCAATGACTGAAGATGCCCAGAATGCTTTGAGACGAACAATGGAAACATACTCCAAAGTTACAAGATTCTTTTTCATTTGTAACTACATTAGCAGAATTATAGAACCACTTGCTTCTAGATGTGCGAAGTTTAGGTTCAAGCCACTTTCAGAAGAAATCATGAGCAGCCGGATATTGCATATTTGTAAAGAAGAAGAGCTCAATCTGGATTCAGAGGCTCTCTCAACCTTAAGTTCTATCTCACAAGGTGATCTTCGTCGGGCGATAACTTACTTGCAGGGAGCTGCTCGCTTATTTGGATCAATTATTTCTTCCAAGGACCTAATCAGTGTATCTGGGGTTGTTCCTCAGCATGTTGTTCAGGCTCTTTTTGCAGCTTGCAAAAGTGGTGATTTTGATTCAGCAAATAAGGAAGTCAATAATGTCATTGCAGAGGGATATCCGGTTTCTCAGATGCTTTATCAGTTATTTGATGTAGTTGTTGAAGCAGATATATCAGATGAACAGAAAGCAAGAATTTGCAAGAGATTGGCTGAGGCAGATAAGTGTCTTGTTGATGGAGCAGATGAGTATCTGCAGCTGCTGGATGTTGCCAGCAATGCAATGCGAGCTCTTTGCAACATGCCAGAAGAATTCCCTCATGAGAGCTAG 1026 0.4454 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICKRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHES* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0261 341 FunFam Replication factor C subunit 5 3 174 - -
Vvi18g0261 341 CDD HLD_clamp_RFC 174 227 - -
Vvi18g0261 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Vvi18g0261 341 SMART AAA_5 41 174 IPR003593 GO:0016887
Vvi18g0261 341 Gene3D - 3 173 IPR027417 -
Vvi18g0261 341 FunFam Replication factor C subunit 4 176 239 - -
Vvi18g0261 341 CDD AAA 26 166 - -
Vvi18g0261 341 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Vvi18g0261 341 Pfam Replication factor C C-terminal domain 241 323 IPR013748 -
Vvi18g0261 341 Gene3D - 176 239 - -
Vvi18g0261 341 FunFam Replication factor C subunit 4 240 328 - -
Vvi18g0261 341 SUPERFAMILY post-AAA+ oligomerization domain-like 240 324 IPR008921 GO:0003677|GO:0006260
Vvi18g0261 341 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 320 - -
Vvi18g0261 341 Gene3D - 240 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0261 Vvi-Chr18 2496704 2503069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0261 1 337 Core DNA Replication Machinery Family AT1G21690 82.301 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0261 K10755 - vvi:100245502 677.167