Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0260 ATGGTTAGTGTCCTTTCTGCCCCTAGAACTATGGGTGTTTCCCCAAGTCAATCAGATGGTTCAGTTTCTTTAGATGAGACCATGTCTACTTGTGATTCTTTGAAGAGTCCAGAATTTGAATATATCAATAACCATGATGCTTCTCCAGTTAGTTTTGTTGAGACAAAGACAGGTACCTGTCTCCATCTTTCGAAGCATGTGGAAATAACAGGAAATATCTGCAAGGGAGATGTGGAGGTGGAAACAATTGACAAAATTGTTAATGTTGATAAAAATTTCCTGGATCCACGGTTTTATGCAGCCATCGATTGTGATATCTACAGTAACTTGCGTGCATCTGAGGCAAAGAAACGGCCTTCCATTGACTTCATGGAAAGGGTTCAGAAAGACATTAATCCCAGCATGCGTGCAATACTCATTGATTGGCTTGTGGAGGTAGCTGAAGAGTACAGGCTTGCACCAGATACACTATTTTTGACTGTTAACTACATAGATCGTTATCTTTCTGGCAATGTTATGAATAGGAAGCAGTTACAATTGCTTGGCATTGCCTGCATGATGATTGCAGCTAAATATGAGGAGATTTGTGCGCTCCAGGTGGCAGAGTTCTGTTACATAACTGATAACACGTACTCCAAGGAGGAGGTTTTGCAAATGGAATCTGCAGTCTTGAATTATTTGAAGTTTGAAATGACAGTCCCAACAACTAAATGTTTTTTGAGGCAATTTATTCATGCTGCTCAAGGGAACAATAAGGATCCATCATTGCAACTGGAATGCTTGGCAAGCTACCTTACAGAGTTATCACTCCTAGAGTACAACATGCTTTGTTATGCACCATCGCTAATAGCTGCTTCTGCGACTTTCTTGGCTAGATTTATACTTTTCTCAGCAGAGAAGCCTTGGAATTCTATGTTGGGGCATTATACACATTACCTGCCCTCTCATTTGCATGATTGTGTTAAGGCATTACATCATCTTTGCTGTAACAACCATGGTTCTGGTTTACCCGCAATTAAGGAGAAATACAGTCAGCACAAGTATAAATTTGTGGCAAAGAAGTATTGCCCCCCTTGTGTGCCTCCAGAGTTTTTTGAAGACCCAAGCGACTAG 1113 0.4079 MVSVLSAPRTMGVSPSQSDGSVSLDETMSTCDSLKSPEFEYINNHDASPVSFVETKTGTCLHLSKHVEITGNICKGDVEVETIDKIVNVDKNFLDPRFYAAIDCDIYSNLRASEAKKRPSIDFMERVQKDINPSMRAILIDWLVEVAEEYRLAPDTLFLTVNYIDRYLSGNVMNRKQLQLLGIACMMIAAKYEEICALQVAEFCYITDNTYSKEEVLQMESAVLNYLKFEMTVPTTKCFLRQFIHAAQGNNKDPSLQLECLASYLTELSLLEYNMLCYAPSLIAASATFLARFILFSAEKPWNSMLGHYTHYLPSHLHDCVKALHHLCCNNHGSGLPAIKEKYSQHKYKFVAKKYCPPCVPPEFFEDPSD* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0260 370 MobiDBLite consensus disorder prediction 1 27 - -
Vvi18g0260 370 ProSitePatterns Cyclins signature. 136 167 IPR006671 -
Vvi18g0260 370 Gene3D - 119 232 - -
Vvi18g0260 370 SUPERFAMILY Cyclin-like 95 231 IPR036915 -
Vvi18g0260 370 Pfam Cyclin, C-terminal domain 234 353 IPR004367 -
Vvi18g0260 370 SUPERFAMILY Cyclin-like 233 358 IPR036915 -
Vvi18g0260 370 MobiDBLite consensus disorder prediction 9 27 - -
Vvi18g0260 370 SMART cyclin_7 141 225 IPR013763 -
Vvi18g0260 370 SMART cyclin_7 238 326 IPR013763 -
Vvi18g0260 370 SMART Cyclin_C_2 234 357 IPR004367 -
Vvi18g0260 370 CDD CYCLIN_AtCycA-like_rpt2 234 348 - -
Vvi18g0260 370 PIRSF Cyclin_A_B_D_E 4 363 IPR046965 GO:0016538|GO:0044772
Vvi18g0260 370 FunFam Cyclin A1 221 353 - -
Vvi18g0260 370 PANTHER CYCLINS 88 345 IPR039361 -
Vvi18g0260 370 Gene3D - 105 353 - -
Vvi18g0260 370 Pfam Cyclin, N-terminal domain 105 231 IPR006671 -
Vvi18g0260 370 FunFam Mitotic cyclin 6 119 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0260 Vvi-Chr18 2485740 2489654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0260 8 367 Core Cell Cycle Gene Families AT1G44110 63.014 2.55e-169 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0260 K06627 - vvi:100255774 722.235