Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0259 ATGTCGACCCAGAATCGCCGTTCCTCAGTTTCTTCGTCGTCGTCGTCGTCGTCCTTGATGAAGCGGTCGTCGTCGGATAATCATGGTAAGGTTACGACGGTGCCGTCGCATTTGGCCAAGAAGCGGCCGCCTCTCAGTAACATTACCAACCAAAAGAATGCTTCTCTGAGTGGGTTAAAAAGCTCGGCTGCGGTCGGGACTATGGTACCATGTGCGGAAAAAATTTCTAAAGCAAAGAGGGGATCTTCTAAAATTTCCCGAAGTGTAGGCATCACTGGAAATACATCATCTGCTTCCTTGAATGTGAAACCAACTGCAGTTATTCCCTGTAAGGACACATCTCTTCCCAAAAGTGATGGAACTGCCTCTACTGTTACCGCCCTTCCAGATCCTTGCAGCTTGGATGTTTCACCGAATCGATCCGATGGTATTTCAGCTTCCATGGATGAGACGATGTCTACTTGTGATTCTTTCAAGAGCCCAGAAGTTGAATATATGGACGTTGATGATTTAGCGGTTAATTCTATTGAGAGGAAGACATGTAGCAAGCTCTACATTTCAGAGCATGTGGAAGCAGAAGGAAATATTTGCAGTGAAGATATACATGTGGAGACAGAAACAAATGGTAAAATTGCTGATATCGATGACAATTTCGGGGATCCACAGTTCTGCGCAACCATGGCTTGTGACATCTACAAGCACCTGCGTGCATCTGAGGCAAGGAAGAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAAGACGTTAATGCAAGCATGAGGTCAATTCTCATTGATTGGCTTGTGGAGGTTGCTGAAGAGTACAGGCTTGTGCCTGATACATTATACTTGACAGTGAACTTCATAGATCGGTATCTTTCTGGGAATGTGATGAACAGGCAACAGCTACAATTGCTTGGTGTTGCATGCATGATGATTGCTGCCAAGTATGAAGAGATTTGTGCACCCCAGGTGGAAGAATTCTGTTACATAACTGATAACACCTATTTCAAGGAGGAGGTTTTGCAAATGGAATCTTCTGTCCTAAATTACTTAAAATTTGAAATGACAGCTCCAACAGCTAAATGTTTTTTGAGGCGATTTGTTCGAGCTGCTCAAGGAATGAACGAGGTTCCATCGTTGCAGCTCGAGTGCTTGGCGAACTATATAGCCGAGCTATCCCTTCTGGAGTACAGTATGCTCTGTTATGCTCCATCACTTATAGCGGCTTCAGCAATTTTCTTGGCCAACTATATTCTTCTCCCTTCAAAGAGACCTTGGAATTCTACCTTGAGGCACTACACACTCTACCAGCCCTCTGATTTGTGTGATTGTGTTAAGGCTCTTCATCGCCTATGCTGTAACAACCACAATTCTAGTTTACCTGCAATCAGGGAGAAATACAGTCAGCACAAGTACAAATTTGTGGCGAAGAAGTACTGCCCTCCTTCCATACCTTCAGAGCTTTTCCACAACCTAAGCAACTAA 1488 0.4442 MSTQNRRSSVSSSSSSSSLMKRSSSDNHGKVTTVPSHLAKKRPPLSNITNQKNASLSGLKSSAAVGTMVPCAEKISKAKRGSSKISRSVGITGNTSSASLNVKPTAVIPCKDTSLPKSDGTASTVTALPDPCSLDVSPNRSDGISASMDETMSTCDSFKSPEVEYMDVDDLAVNSIERKTCSKLYISEHVEAEGNICSEDIHVETETNGKIADIDDNFGDPQFCATMACDIYKHLRASEARKRPSTDFMERIQKDVNASMRSILIDWLVEVAEEYRLVPDTLYLTVNFIDRYLSGNVMNRQQLQLLGVACMMIAAKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTAKCFLRRFVRAAQGMNEVPSLQLECLANYIAELSLLEYSMLCYAPSLIAASAIFLANYILLPSKRPWNSTLRHYTLYQPSDLCDCVKALHRLCCNNHNSSLPAIREKYSQHKYKFVAKKYCPPSIPSELFHNLSN* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0259 495 SUPERFAMILY Cyclin-like 219 356 IPR036915 -
Vvi18g0259 495 ProSitePatterns Cyclins signature. 261 292 IPR006671 -
Vvi18g0259 495 PIRSF Cyclin_A_B_D_E 1 493 IPR046965 GO:0016538|GO:0044772
Vvi18g0259 495 MobiDBLite consensus disorder prediction 1 52 - -
Vvi18g0259 495 CDD CYCLIN_AtCycA_like_rpt1 220 355 - -
Vvi18g0259 495 Gene3D - 244 357 - -
Vvi18g0259 495 PANTHER CYCLINS 172 470 IPR039361 -
Vvi18g0259 495 MobiDBLite consensus disorder prediction 1 32 - -
Vvi18g0259 495 Pfam Cyclin, C-terminal domain 359 478 IPR004367 -
Vvi18g0259 495 SMART cyclin_7 363 451 IPR013763 -
Vvi18g0259 495 SMART cyclin_7 266 350 IPR013763 -
Vvi18g0259 495 MobiDBLite consensus disorder prediction 82 98 - -
Vvi18g0259 495 Pfam Cyclin, N-terminal domain 230 356 IPR006671 -
Vvi18g0259 495 SUPERFAMILY Cyclin-like 359 484 IPR036915 -
Vvi18g0259 495 FunFam Cyclin A1 346 478 - -
Vvi18g0259 495 Gene3D - 230 478 - -
Vvi18g0259 495 MobiDBLite consensus disorder prediction 76 98 - -
Vvi18g0259 495 FunFam Mitotic cyclin 6 244 344 - -
Vvi18g0259 495 CDD CYCLIN_AtCycA-like_rpt2 359 473 - -
Vvi18g0259 495 SMART Cyclin_C_2 359 482 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0259 Vvi-Chr18 2480136 2483972 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0259 4 492 Core Cell Cycle Gene Families AT1G44110 60.772 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0259 K06627 - vvi:100250590 976.081