Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0254 ATGAAGTGTTCCGGTTCACTGCGCAGCAACTCAAAGGTCATGCCCAGGCCTGAAATGTCTTCACCAGAAGACCACAAGAAAAGGACGTCGATGGCTTCATCCAACAATGACGGTTCCAGCAGATCCATGAAAGCTCCTCTTAGTGAACTCAATGGGGTTGTTTCCTCCACTTCTTCTTCATTGTCTGCGTCTTCTAACTCTTCTTTTGGTGGGTCCTTTAAAGGAATGCCTCTCAGGAGACTATCTGGGTGTTATGAGTGCAGAATGGTGGTTGATCCGGTTCTTGGAATCACTAGAGACCCTTCTTTGAGAACCACCATCTGTTCCTGTCCTGATTGTGGTGAAATCTTCATGAAAGCTGAAATTTTGGAGCTTCATCAGGCCGTCAGACACGCCGTGTCAGAACCGGGTCCAGAAGACACAAGCAAGAACACGGTGGAAATCATATTCCAATCGAACTGGCTAAAGAAACAGGCCCCAGTCATTCTCAAAGTCCACAACACCCCCAAAACCATATCCAAATTTGAAGAATACAGAGACTCCAATAAAACCAAAGCCACCAAGCTCCCAAAGAAACACCCACGCTGCGTTGCAGACGGCAACGAACGCCTCCGCTTCCACTGCACCACTTTCGTCTGCTCCATCGGCCTCAACGGTTCCTCCAATCTCTGCAACTCAATTCCAAGCTGCAATATCTGCAGTATCATCAAGAACGGTTTCAAGGTCGCCGGAGGGGTTCCCGGAAAAAGGATTCTGACCACAGCCACCAGTGGAAAAGCCCGTGACAGTGCTAGAATGTCGTCGCCGGATGGTAAGGTGAAGAGGGCCATGCTGGTTTGCCGAGTAACATCTCACGTTGACTTCTCCAGATCCAATGGCTTGAGTGCAGTCGGAAATTACTACCAACAGGAAATGGGTGGTGCTACTTGCATTCAAGGTAATTAA 945 0.4868 MKCSGSLRSNSKVMPRPEMSSPEDHKKRTSMASSNNDGSSRSMKAPLSELNGVVSSTSSSLSASSNSSFGGSFKGMPLRRLSGCYECRMVVDPVLGITRDPSLRTTICSCPDCGEIFMKAEILELHQAVRHAVSEPGPEDTSKNTVEIIFQSNWLKKQAPVILKVHNTPKTISKFEEYRDSNKTKATKLPKKHPRCVADGNERLRFHCTTFVCSIGLNGSSNLCNSIPSCNICSIIKNGFKVAGGVPGKRILTTATSGKARDSARMSSPDGKVKRAMLVCRVTSHVDFSRSNGLSAVGNYYQQEMGGATCIQGN* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0254 314 ProSitePatterns Zinc finger C2H2 type domain signature. 108 131 IPR013087 -
Vvi18g0254 314 Gene3D - 137 299 - -
Vvi18g0254 314 MobiDBLite consensus disorder prediction 1 16 - -
Vvi18g0254 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 136 IPR013087 -
Vvi18g0254 314 MobiDBLite consensus disorder prediction 1 45 - -
Vvi18g0254 314 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 24 286 - -
Vvi18g0254 314 SUPERFAMILY ADP-ribosylation 138 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0254 Vvi-Chr18 2438554 2440490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0254 73 284 C2H2 Transcription Factor Family AT1G75710 50.450 3.54e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi18g0254 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0254 - - vvi:100252363 598.201