Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0251 ATGGGCACCTTCGTATTCTTGATCTCTTTCATTGTTTCCCTCTCTCTATTCGTCTTCTCAGTTGATTCTGCATCTTCTTCTTGTCCCATAGATCTTGGCTATGTCGAGACCTACCCATGGGACACCTCTTCGTGCCGCGATGGGGATCAAGACCACTGCTGCATGGCCCTTCTCAGTCTCTTTGGCATGGGCCTTGCACAGCACCTGAAAGAAACTTCCATGTTTCAGCTCCCCACTGCTGCTGTCTCATCTTCTTGCCTCTCAGAATTGCAGACTAGGCTCTCTGCCATGGCGTTCCAACCGTCTTTAGTCTCTCTATGCTTCAAGAACTCGACTCAGTTTGTTGCTAATTCCTCGAGCTGTGCTGGAATCATCACGAAAGAAGATTGGATCAAAAGGGTTGGGGAAAAGACGGCCTTGGATTCATCTTGCAAGGACCTGACTGGACTTGTCCAGTGCGGCTCCTGCCTCGATGCTGGGATGAAGGTGAATTCCCAGTTGCGGGCTCTTGCTCCAAATTCCACTAAATGCTTTTACTTCACTATTCTGTATGCTGCAGGCATTGTTAATGAGTTAGGCCCTCAGGATGGCACGACTGCTGCTTGCATACTAGGCTTGCCTTTGTCTAACTCCAAAACTGGTGAAACCTCTAATCATCTGAGCCAAGAGACTTTATTCAAATTGATTTTCGGGTTCTTGGGTGCTTTTCTGGTTGTTTTGTTTGCCTTGGGATCAGTGGTGCTGTACAGGATTTGGCAAAAGAAGAAGAAAAACGCCTTCCATGAAGAATTTGTGAGCAGCATGCAGGCTAGAGTTTTACCCAACACTGGTGCAAAATGGTATCATATCGCTGAAATTGAACGAGCCACAGATGGATTTTCACAGAAGAATTTTATTGGCCAAGGCGCATATGGGGTTGTACACAAGGGCACCCTTTCTGATGGCACTTTAGTTGCAGTGAAACAAATTCTTGATTTGGATTCTCAAGGTGATGAGGAATTTTCCAATGAGGTTGAGATCATAAGCAAAATAAGGCACAGGAACCTTCTTTCTCTTCGGGGTTGCTGCGTTACAAGTGACGACTGTAAAGGTAAAAGGCGATATCTTGTTTGTGATTACATGTTGAATGGTAACCTAAGTGATCATCTTTTCAACTCTAGCAATAGCAGGAAGGAACTAACTTGGCCTCAGCGAAAGAATATAATTCTTGATGTAGGAAAAGGGCTCGCTTACTTGCATGATGGAATCAAACCTGCCATTTATCATCGAGATATCAAGACGACTAACATACTTTTGGACTTGGAAATGAAAGCAAAAGTGGCAGATTTTGGGTTAGCCAAGCAAAGTAGAGAAGGTCAGTCTCATCTCACCACAAGGGTAGCTGGTACACATGGATATCTAGCACCAGAGTATGCTCTCTATGGACAATTAACAGAAAAAAGCGATGTTTACAGCTTTGGGATCGTGATTCTTGAAACTATGAGTGGGAGGAAGGTGTTGGATACATCAAGTTCTTCCATGGTTTTGATCACAGATTGGGCTTGGATGCTTGTGAAATCAGGAAAAGTGGAAGAGGTTTTTGACAACTTCATAAGAAAGGAAGGACCAAAAGGTGTCATGGAGAGATTTGTTCTCGTTGGGATTCTTTGCGCACATGTAATGGTGGCTTTTAGACCTACCATTGCAGAGGCTCTAAAGATGCTGGAAGGTGATATTGACATTCCAAGATTACCAGATAGGCCATGGCCTCTTAGCCATGAGGCATTTCGATCTTCTTTGCAGTGTAGTTTTTTAACAAATGAGAGATCAAGACCCAGCACAAGCATGAGTACGATATAA 1839 0.441 MGTFVFLISFIVSLSLFVFSVDSASSSCPIDLGYVETYPWDTSSCRDGDQDHCCMALLSLFGMGLAQHLKETSMFQLPTAAVSSSCLSELQTRLSAMAFQPSLVSLCFKNSTQFVANSSSCAGIITKEDWIKRVGEKTALDSSCKDLTGLVQCGSCLDAGMKVNSQLRALAPNSTKCFYFTILYAAGIVNELGPQDGTTAACILGLPLSNSKTGETSNHLSQETLFKLIFGFLGAFLVVLFALGSVVLYRIWQKKKKNAFHEEFVSSMQARVLPNTGAKWYHIAEIERATDGFSQKNFIGQGAYGVVHKGTLSDGTLVAVKQILDLDSQGDEEFSNEVEIISKIRHRNLLSLRGCCVTSDDCKGKRRYLVCDYMLNGNLSDHLFNSSNSRKELTWPQRKNIILDVGKGLAYLHDGIKPAIYHRDIKTTNILLDLEMKAKVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGIVILETMSGRKVLDTSSSSMVLITDWAWMLVKSGKVEEVFDNFIRKEGPKGVMERFVLVGILCAHVMVAFRPTIAEALKMLEGDIDIPRLPDRPWPLSHEAFRSSLQCSFLTNERSRPSTSMSTI* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0251 612 SMART serkin_6 293 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0251 612 Pfam Protein kinase domain 294 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0251 612 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 114 607 - -
Vvi18g0251 612 SUPERFAMILY Protein kinase-like (PK-like) 278 587 IPR011009 -
Vvi18g0251 612 Gene3D Transferase(Phosphotransferase) domain 1 374 574 - -
Vvi18g0251 612 CDD STKc_IRAK 299 570 - -
Vvi18g0251 612 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Vvi18g0251 612 FunFam Receptor-like serine/threonine-protein kinase At4g25390 258 373 - -
Vvi18g0251 612 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 374 576 - -
Vvi18g0251 612 Gene3D Phosphorylase Kinase; domain 1 252 373 - -
Vvi18g0251 612 ProSiteProfiles Protein kinase domain profile. 293 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0251 612 Pfam SPARK 24 177 IPR043891 -
Vvi18g0251 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0251 Vvi-Chr18 2415377 2417215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0251 23 590 Receptor kinase-like Gene Family AT1G11050 54.174 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vvi18g0251 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0251 - - vvi:100264391 1180.24