Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0244 ATGATGATGGCGAAATCGTTGAAGGGCGCGAATGTGTTCATGTCGCGGAACCTGGTCCCGCCGGAACTCTTTGATTCGCTTCACGACGCTCTCAAGCTTAACGGCGCCGATGTTTTCCTCTGCTGTGATCCTTCGAGGAACGGCCCTAACGATTACCACATTATCTCATCTTCCGATCACGAGAAATTTGAGGATCTTAGGGCTAAGGGTTGTAATTTGCTCGGGCCACAATGCGTGCTTTCATGTGCAAAGGAACACAGGCCTCTTCCGAAACAAGGGTTCACTTGTTGCCTTGCGATGGATGGGGTTAAAGTCCTCGCGTCTGGTTTTGACATGGATGAGAAGGTTAAGATTGGGAAGTTGGTGACTGCAATGGGAGGTGTTTTGCATACTAAAGCATCTTCCGATTGGGCTTCTAACATTCTCAAGAAACCAATTGTTACTATCAATTGGTTACATCAATGCTGGACTGAGCACCGTGTGGTTCCTCAGGAGTCATACAGGGTTCTTCCCTTTTCTGGATTGACAATTTGTGTTACTAAAATTCCAGCAGATGAACGCAAGGAGATGGAAATTCTTATCAAACAAAATGGGGGAAAATATTCTGCTGACCTTACCAGGAATTGCACACATTTAATAACTGATATATCCTCTCCTGAAGGTGACAAATACAAGGTTGCCCGAAGATGGGGCCATATCCATATTGTTACTCGGAAATGGTTTGATCAATCTATTGCTAGAAAAGCATGTGTTAATGAGGAGTCCTATACTGTTCAGGGTGGTACTGCATCTTCAATCAACTCTGTAAGGACACATTTGACAGCATCACAAAGCCAAGACAAGAGTAATGTAAATTTCCAATCTGCCTCATCTTCATTGGCTGCAGATTCAAACTTGCAAGCTCCTGCCATGCAGGATAAGGATGAAAATAAGTTAGATGGGCTTGTTGCTGATGATTCTCAAACTGAGGACAGTGACTTGTACTTATCAGATTGCAGGATTTTACTTGTTGGTTTTGAAGCCTCTGAAATGCGTAAGCTAGTAAATATGGTGCGCAGAGGTGGGGGCTCCCGGTATATGTCATTCAATGAAAAATTGACTCACATAGTTGTTGGAACTCCTTCAGAAGTTGAAAAAAAGGTTGTAAGGGGCCTTGCAGCTACAGGTGTCATTTCTGTGGTAAGGACAATCTGGCTTGAAGATTGTGATCATGAAAAGAAAGAAGTTTCTGTACTTCGGAGGCATATTGCTCATGATTTGCTCCTTCCAAAAGATTCTGCTTGCTTGAACAAAGGAGCAGTGGTAGGCATTATAAACCAGGGGAAAAGCTCTACAGTTGCATCCAGCATGCCAGCTGACCAGTCACTGGGAAGCATGAACACTGGATCTAGAATGTTATTGGAGAAAAGCAAGCAAAGAATTCCGGAAGTTAATGTGAATTGGGACAACTTTCTAGAAGAAACAGCGAGGTCTGCTCAGCAAAGCATGCCTTCCATAAATGATAAATATAAGAAGACTCAACAGAAGATGGAGCAATATTCCAACACTCTAAATGTTAAGGATGGGAAGGAATCAAGAGTGTTTAAGGGGAAGCAGTTTCGCTTTTCACATTCTTTTCCTGAAGATAGAAGAGCTGAAATTGTTCAGTGGGTAAATCAAGGGGGAGGAGATGTAGTGGATGATTGGTGCAAACAGAATGTGCACTTCGTTGTTGAATGTCATGGTGCTTTGCTACCCAAGTCTGTCAATGCCTCTCAAACTACTCATGTGTCCAGTCACTGGATTCGATCTTGTTTAGAGGATGGATGCTTGCTGGACGTCAGCAGTCACATTCTTTATTCTCCCCTTCCCTGCCAGATCCCTTTACCTGGATTTGAAAAGCTTCGCTTCTGTGTTTCACAGTATGAAGAGAAAGATAGATTGCTGTTAAGAAACTTGTGCTTTGTTCTTGGAGCTAAATTTGTGGAGAAACTGACTAAAAAGGTCACCCATTTGCTATGTAAGTTCACTGGGGGCCCAAAATATGAGGCTGCTTGTAAATGGGGAATAAAAGCAGTTACATCTGAATGGATTTATGAGTGCATCAAGCAGAACGGAGTTGTTTATGTGGACTCATTTTGTCCAAAAGAAATTACTGCTCATGACCGGCAAGCAGGATTATGCATTATGAGCCAGTATCCTACACAAGCTGCTCAAATGATATCTGCTGACAAGGGTTCCCAGTTACCAACTCAATCTCATGACCTTGGGGACATACCGACTCAATCTATTTGTAATAGAAGTGACAGATTTAATGAAGAGGCAAGACATTCCAGTGTTCACGCAAAAAGAGCAAGGCTTTTGGAAGATGAGAGTCAAAAGACTGTGCCTCCTTCTGGAGCACAAGACATGGATTTTATCAGCAAGATGAACTCTTCTGGAACCACCATCACTGCAGTTACCGAAGAAACTTCTCATGTTGTTCCTGATGTTGCTGCTGCTATTGAGGATTTGTTAGAGCAAACTAGTAAGATTCATGATCTCAAATCACCAGGGAGGACTGGGTGTGAAAAACATCTTTTCTCATCTGATTGTTCACCCCTTGGTCAAGATCATGCAGATTCTCATTCATCTTTCGACTTATCTAAGCACTGGTTAAACAGGATTGAGAAAAAAGATGATATTTGCAATCCTCCTGGAGATGTCAAGGCAAGCACTTACGATGGCTTTAGTGAAACACAAACAGAGTCTCAGGTCGTTGGCTATGAAGAAGACTTATCTGGTCGGCAAATGATAATAGACAGAGTTCGAACCAGAAGTAGCATGTGTTGA 2811 0.4265 MMMAKSLKGANVFMSRNLVPPELFDSLHDALKLNGADVFLCCDPSRNGPNDYHIISSSDHEKFEDLRAKGCNLLGPQCVLSCAKEHRPLPKQGFTCCLAMDGVKVLASGFDMDEKVKIGKLVTAMGGVLHTKASSDWASNILKKPIVTINWLHQCWTEHRVVPQESYRVLPFSGLTICVTKIPADERKEMEILIKQNGGKYSADLTRNCTHLITDISSPEGDKYKVARRWGHIHIVTRKWFDQSIARKACVNEESYTVQGGTASSINSVRTHLTASQSQDKSNVNFQSASSSLAADSNLQAPAMQDKDENKLDGLVADDSQTEDSDLYLSDCRILLVGFEASEMRKLVNMVRRGGGSRYMSFNEKLTHIVVGTPSEVEKKVVRGLAATGVISVVRTIWLEDCDHEKKEVSVLRRHIAHDLLLPKDSACLNKGAVVGIINQGKSSTVASSMPADQSLGSMNTGSRMLLEKSKQRIPEVNVNWDNFLEETARSAQQSMPSINDKYKKTQQKMEQYSNTLNVKDGKESRVFKGKQFRFSHSFPEDRRAEIVQWVNQGGGDVVDDWCKQNVHFVVECHGALLPKSVNASQTTHVSSHWIRSCLEDGCLLDVSSHILYSPLPCQIPLPGFEKLRFCVSQYEEKDRLLLRNLCFVLGAKFVEKLTKKVTHLLCKFTGGPKYEAACKWGIKAVTSEWIYECIKQNGVVYVDSFCPKEITAHDRQAGLCIMSQYPTQAAQMISADKGSQLPTQSHDLGDIPTQSICNRSDRFNEEARHSSVHAKRARLLEDESQKTVPPSGAQDMDFISKMNSSGTTITAVTEETSHVVPDVAAAIEDLLEQTSKIHDLKSPGRTGCEKHLFSSDCSPLGQDHADSHSSFDLSKHWLNRIEKKDDICNPPGDVKASTYDGFSETQTESQVVGYEEDLSGRQMIIDRVRTRSSMC* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0244 936 ProSiteProfiles BRCT domain profile. 167 258 IPR001357 -
Vvi18g0244 936 SUPERFAMILY BRCT domain 525 614 IPR036420 -
Vvi18g0244 936 ProSiteProfiles BRCT domain profile. 324 416 IPR001357 -
Vvi18g0244 936 FunFam Transcription coactivator 306 416 - -
Vvi18g0244 936 FunFam Transcription coactivator 520 618 - -
Vvi18g0244 936 ProSiteProfiles BRCT domain profile. 100 169 IPR001357 -
Vvi18g0244 936 Gene3D BRCT domain 36 94 IPR036420 -
Vvi18g0244 936 Gene3D BRCT domain 97 170 IPR036420 -
Vvi18g0244 936 ProSiteProfiles BRCT domain profile. 625 708 IPR001357 -
Vvi18g0244 936 CDD BRCT 103 155 - -
Vvi18g0244 936 Gene3D BRCT domain 306 413 IPR036420 -
Vvi18g0244 936 SUPERFAMILY BRCT domain 320 409 IPR036420 -
Vvi18g0244 936 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 3 934 - -
Vvi18g0244 936 ProSiteProfiles BRCT domain profile. 523 612 IPR001357 -
Vvi18g0244 936 Gene3D BRCT domain 171 259 IPR036420 -
Vvi18g0244 936 SUPERFAMILY BRCT domain 58 169 IPR036420 -
Vvi18g0244 936 SUPERFAMILY BRCT domain 621 708 IPR036420 -
Vvi18g0244 936 CDD BRCT_TopBP1_rpt2_like 171 248 - -
Vvi18g0244 936 FunFam DNA topoisomerase II binding protein 1 172 265 - -
Vvi18g0244 936 Gene3D BRCT domain 620 710 IPR036420 -
Vvi18g0244 936 Pfam BRCA1 C Terminus (BRCT) domain 327 402 IPR001357 -
Vvi18g0244 936 SUPERFAMILY BRCT domain 171 258 IPR036420 -
Vvi18g0244 936 Gene3D BRCT domain 520 618 IPR036420 -
Vvi18g0244 936 FunFam PAX interacting protein 1 621 710 - -
Vvi18g0244 936 Pfam twin BRCT domain 175 240 IPR001357 -
Vvi18g0244 936 Pfam twin BRCT domain 628 690 IPR001357 -
Vvi18g0244 936 SMART BRCT_7 622 698 IPR001357 -
Vvi18g0244 936 SMART BRCT_7 326 406 IPR001357 -
Vvi18g0244 936 SMART BRCT_7 169 248 IPR001357 -
Vvi18g0244 936 SMART BRCT_7 525 602 IPR001357 -
Vvi18g0244 936 SMART BRCT_7 97 159 IPR001357 -
Vvi18g0244 936 FunFam Transcription coactivator 36 94 - -
Vvi18g0244 936 CDD BRCT_TopBP1_rpt2_like 623 698 - -
Vvi18g0244 936 Pfam BRCT domain, a BRCA1 C-terminus domain 525 609 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0244 1 935 Core DNA Replication Machinery Family AT1G77320 51.728 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0244 K10728 - vvi:100260958 1860.11