Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0241 ATGGGGAGAGGGAAGATTGAGATCAAGAGGATCGAGAACTCAAGCAACAGGCAGGTGACCTACTCAAAGAGGAGAAATGGGATCATGAAGAAGGCCAAGGAGATCACTGTTCTCTGCGATGCTCATGTCTCTCTTGTTATCTTTGCTAGCTCTGGAAAGATGCACGAGTACTGTAGCCCTTCTACAACGTTGATTGATATCTTGGATAGGTATCACAAGCAGTCTGGGAAGAGGCTATGGGATGCAAAACATGAAAATCTCAACAATGAATTGGATAGGATCAAAAAGGAGAATGATAGCATGCAGATTGAACTCAGGCACCTGAAGGGGGAGGATATCTCATCTCTGCACCACAAAGAACTCATGGCCATTGAGGATGCCCTTGAGATTGGCCTTGCAAGTGTTCGCAACAAACAGATGGAATTCTACAAGATGGTCAAGAAAAATCAACGAATCCTGGAGGAGGAGAACAAGCACCTCAATTACATCGTGCACCACCAGGGTATGCCCATGGAGGCGGGCAATGTGAGAGAGGTGGAAAGTGGATATCATCAGAGAGCTGTGAGGGACTACAATCCCCAGATGCCTTTCGCCTTCCGGGTGCAGCCAATTCAGCCAAACTTACAGGAGAGGATATAA 639 0.4679 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAHVSLVIFASSGKMHEYCSPSTTLIDILDRYHKQSGKRLWDAKHENLNNELDRIKKENDSMQIELRHLKGEDISSLHHKELMAIEDALEIGLASVRNKQMEFYKMVKKNQRILEEENKHLNYIVHHQGMPMEAGNVREVESGYHQRAVRDYNPQMPFAFRVQPIQPNLQERI* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0241 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g0241 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g0241 212 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vvi18g0241 212 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vvi18g0241 212 Pfam K-box region 82 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g0241 212 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g0241 212 Coils Coil 77 111 - -
Vvi18g0241 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g0241 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g0241 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g0241 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi18g0241 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Vvi18g0241 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi18g0241 212 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0241 Vvi-Chr18 2291990 2293992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0241 1 143 MADS-box Gene Family AT5G20240 71.034 3.34e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi18g0241 K-box 2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0241 K09264 - vvi:100232978 427.172