Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0240 ATGGAATCTGAGGTATTGGGTGCTGAGGATCCATTGAGTAATTGCACTGGGCCGAGCGAGCAGAAGGGCGGTGAGGGAAGGGTTAGAGATGCTGTGGAGGGGAGAAGTGATCATGTCGTGGATGGGATAAAGGTTGATATATGGAGCCAAATTTTGCCTTCACAGGAGGGTGAAATGCAATTGGAATTTTTGGGCATGGACGGTTTCCTCAGTGATTGTTCTGAGCTGAATGACCAGATGGGTGCAAAGTTGGCTGGGGATGTTAAAGATAAAGGTGGTGTTTTAGGCGGGATATCCGTTGGTGGGTTTGAGCAAGCATCGCCTTCACAGGGTTGTGAAACGCCCTTGGAATTATTACTTACAGGTGGTTCGCTGAGTGATTGTGCTGAACATAATGAGTGCAAGGCTGACATGAGTGTGAATGGTTCTTGTGGGGAGGTCAGGGAGGTCGTGGAAGAGAAAATTGACGGTTTAGGTGGGATAAATGAGCAACTATTGCCTTCACAGGGTTGTGAAATGCCAATGGAATTACTAGTTTCAGGTGGTTCACTGGGTAATTGTGGTGAAGATAGTGAAAACAAGGTTTATCTTTCTGTTAATGGTTCATGTGTGGAAGAGGTCAAAGAGGTTGTGGAAGAGAAAAATGAAATGTTAGGTGGGATAAATGAGCAAATGTTGCCTTCACAGGATTGTGAGATGCCCTTGGAGTTACTAGTTACAGGGGGGTTGCTATGTAGTTGCGATGCAGATAATGAGTGCAAGGCTGATACGAGCATTGAAGGTTCTTATGGGGAGGAGGCTAGGGAGGTTGTCAAAGAGAAAAGTGAGATTTTTGATGGAACAGATGAGCAAACACTGCCTTCACAAGGTTGTGAAATGCTTACAGGTGGTTCTTTGAGTAGTTGTGGCAAAGATAATGAGTGCAAGGTTAATACGAGCATTAATGGTTCTTGTTGGGAGGTTGTGGAAGGGAAAAATGATGCTTTAGGTGGAATAAATGAGCCAATATTGCCTTCACAGAGGGTTGAAACTCCCTTGGAATCTTTAGTTGCAGGTGGTTCACTGAGTACTTGTGTAAAAAATAATGACTACAAGGTTGAGATGAGTATCAATGGTTCTTCTGGAAAGGATGTTCAGGAGGCTGTGGAAGAGAGAAGTGATATTTTAGATGGGATAGATGAGCAGATCTTGCCTTCACAAGGTTGTGAAATGCCCTTGGAGTCATTAATTAAGGGTTCACTAAGTAATTGTGCCAAAGATGACGAGTGCAAGGTTAATTTGAGTATTAATGCCTCTTGTTGCAAACAGATTAGGGAGGTTGTAGAAGAGAAAAGTGACATCTTACGTATGATAAATGAGCAAATATTGCCATCTCAGGGCTGTGGAAGGCCATTGGAATCACCAAGTAATTTTGCAGAACAGAATAAGCATAAGGATTCTGGGGTTGCTGGTGGTCCCTCTGAGTTTGTGGATGATATTTTAGCTGGATCACAGAACAACAAGATCAGACAAATTTTGCCCTCACAGGATTGTAAAATTCCCTTGGAGCATTTATCTGTGGCTAGTTCACCTACTGATTGTGCTGAAGGGAATGTGCAGAAGGTTACTGCAGGATTCGATGGTTCCTCTGCAGAGACAGTGACTGAGGTTGTGGAAGAGAAAAGTGATATTTTTCTGGGAATGAAGGGTGAAATGTGCAGCCAAATATCACCTATTGAAGAAAATATGTATGATTTAAGAGAAAGATCATCCAGCATGGCACCTGATTATACTCTTGAAAAATCAGACTCCCCGCCACCTTGTTGCTACTCTGGTGTTGTGGATAATGGTTCCTCTGAGATTTTTGCTGAGCCAGGTTATTCAGGAGCTGATGTTCTTATTGATGCTTTTAATTCTACTGATGCTGATTCTTCTGGAAATATAGGTGGTGAAGAAAAAGTTGATGTTAGATGGGATTGTGTTTCAGAAACCAAATGTCCAGAAATTATATGTTTGCCTCCTCGGAGGAGTGCCCGTGCAAGAAAATCGAGCCAGAAGACGCAGACAGCAAATGTTGCAAGGAAAGGCTGGAAAACTGCCAACAAGAAGCCACACTCTCATGGAATATTTGAAATTTTCTTGAAGGTTGTCAGAAAGAAGCGAAGCAGTTTCTGCAAACCGGCTCGTGCTTCTATTTGGGGATCATTGGAGAATATTACTCAAGTTTTTTATCATAATAGTGACCTTGATTGTGGTCGGGTTCAGAATCAAGGATCACGAAAAACAAAGGGTGGCCGAGGATGTGGAAAGCGGAATAAGAGTAGGGCAGTTGGAAACTCACAAGGGTCAAAGGTAAAAGGTCGTGCATCAACTAGTCATATTCGTTTGAAGGTTAAAATGGGCAAAAGGGTAAGTCAAAGTGGTTCAAAGGATATTGTTCCGGACGTGGTTGATACTTCAGATCCTGTTCAGACCATGTTTAGTGATAATGGGTCTGAACTATGCTGGGCCATGGGTTCAGAATTACAGAAATTCACAGTTGGCATTGAAACACAATTAGTGGAAGAAATCCCTGGGACTGGGCAGCATCTCACTTCTCATGGGAATCTGGAGAAAGAAAAAACATCTCCAATTGATTCTGCTTTAGACGAAGTCCACTTCACAGATAAGGACCAGGAGACCATTGTGATTCCAGATAACTCTGATAGAAATGCTGCCACTAATTATCTTAGTATTTCTTCCAAGACAGAGGTTGAAGCATTGGAAGGTGCAATTGACAATGGGTACTTAGATCCAGGAACTTCACCTGATTCAGAAGTGATCAACCTGATTCCTGATGGCCAAGTTGGTGCAAGGGTTCAGGAAGACTTGCATGATGTTGTTCAGGCTTCTTCCAAAGATTCTGTTGCTGCTGCAGATGTAACAAGTTCGAATGTGCCTCTGTTGAAAAGCAAGAAAGGAAAGAAGAAAGATAAGCTCTTTCAGGCAGGTAACTCTGATGTGGAAGATCGATTGCCTTGTCAAGCAAGCCAAAGCAGAGCTAGAGTAACAGAAAAACAAGGAGATGGGTGGAAAATGGAAAATGGCCTTTACTCTAGTGAAAATTTGGTTTCATCCAGCAGTGGAATTGCTTCAAGCAACTTGTTGAGCTTTCAGGGGTGTTCGACTGAACTGTTGCCTCCTGTGGAAGACACTTTGAATTTGAGTCTAGATGGATCATCCGAATCACAGAACTCTAAGAAATTACTTCCTTCTACTAAAGCTAAGGGGCATAAACTTCCCAAAAGTTCAAAATCTGGTCGAGCAAGCAAGAGCAGGTCACAGTTCCTTGATTCAGGGAGGAACCAAAGACGAAATGCTTGTAGGCAGAAGGAAAGCCAACAAAAGTCAGCTAGAAAGAACGTAAACGAGGAGGGTGTTTGCAACCATGTCTGCAAAGTTGAAAGTCACCAGGAAATAGCTTATGCAGTAGAAAATCACGTAGTTGATGATATTGGAGAAATTGTTACTGCTGAAAAAACTGTCTCCAAAGACATGTCTAACTTGGACATGATCCAAAATGAGGTAGTGAGGCAGTATTTACCACCACGGATTGCTTGGGTGCGTTGTGATGATTGCTATAAATGGAGACGTATAGCGGCTGCACTTGCAGATTCCATTGAAGAAACAAATTGCAAATGGATCTGCAAGGACAACATGGATAAAGCATTTGCTGACTGCTCAATCCCTCAAGAGAAGTCAAATGGAGAGATTAATGCTGAGTTGGAAATATCAGATGCCTCATGTGAAGAAGATGTTTATGATGCCCATTTAACTTCTAAGGAATTTGGACAAAGGCGTTCAACAGTTACCCAATCATCATCTTGGATGCTGATTAGGTCTAATTTATTTCTGCACCGTAGCCGCAGAACTCAAACTATTGATGAGGTAATGGTTTGCCACTGCAAAAGACCTGTAGAAGGCCGTTTCGGTTGTGGAGATGAATGCCTGAATCGAATGCTTAACATTGAATGTGTTCAAGGGACCTGCCCATGTGGGGATCTCTGTTCAAATCAACAGTTCCAGAAACGTGGTTATGCCAAATTGAAGTGGTTCAAGTGTGGGAAGAAGGGTTATGGGCTGCAGTTGCAACAAGATATTTCTCAAGGGCAGTTTCTTATTGAATATGTTGGAGAGGTACTTGATTTGCAAACATACGAAGCACGACAAAAGGAGTATGCTTCTAGGGGTCATAAGCATTTCTACTTCATGACATTGAATGGCAGTGAGGTAATAGATGCATGCGCAAAAGGAAATTTGGGGCGTTTCATCAACCATAGTTGTGATCCTAACTGCCGCACAGAAAAGTGGATGGTGAATGGAGAAATTTGTATTGGACTATTTGCATTAAGGGATATAAAAAAGGGTGAAGAGGTGACATTTGATTACAACTATGTGAGGGTGTTTGGTGCTGCCGCCAAAAAGTGTGTCTGTGGTTCACCACAATGTCGGGGCTATATAGGTGGAGATCCACTTAGCACCGAAGTAATTGTTCAAGGTGACTCAGATGAAGAATATCCTGAACCTGTGATGGTCAATGAAGATGGTGAAACTGCTGATAGCTTTGACAATACAATATCTACAACCAGTTCCTTTGATGCTGCAGAAATTCAAAGTAAAGCTTTTTCAAAAAATAAATTGGACAACTTCAAAACTGCTGTACAACAATTAGTGGTTGGACCTGCAATTTCAGAATCACAGGCATCCTTGGAGATGGTCAACTCAATTGGAAAGTTAGCTCCTGTTCAATCAGTTAAAGTTTCTGTGCAAACAGAAGATTTAATGAATAAACCCATAACTGCTATTCAGCAAAAAATTCCCATGGAAGAAGAGACTACAAGCAAGCCTTTGTGCTCTGATCAGAGGCTTGATTGGCCTTTGACTCGGATGCTTAATAAAGCATCATCTGATTCTGCTGATGCTAATGTATCCAAATCTGAAACCCCTGAAGAGAAGCAAGTTTGTTCAAAATCGCGTCTTCTCATGAAAGCTTCTCGTTCATCTAGTTCAGTTAAAAGGGGAAAATCTAATAGTAATCCTGTGAATGCCAACAAGCCTCCTGGTATTGGCAACAAAACTCAGGTTTTGTCCAACAAGCCCAAAAAATTATTGGATGGTTCTGCTAATGCCCGTTTTGAAGCAGTTCAGGAGAAACTCAATGAGTTGCTAGATGCTAATGGAGGAATAAGCAAAAGGAAAGATTCATCTAAAGGATACTTGAAGCTTTTGCTCCTCACTGTAGCATCAGGTGACAACGGCAATCGTGAAGCAATTCAGAGCACGCGAGATCTTTCAATGATCCTTGATGCACTCTTGAAAACAAAATCTCGAGTTGTCTTGGTTGATATTCTTAACAAAAATGGTTTGCGGATGCTGCACAATATAATGAAGCAGTATAGCAGGGAATTCATTAAGATTCCTGTTCTTCGCAAGCTTCTGAAGGTCTTAGAGTATTTGGCACTGAGGGGGATACTTACCTTGGAACATATTAATGGAGGTCCTCCTTGTCCTGGAATGGAGAGTTTTAGAGATTCAATGTTGACACTGACTGAGCACAATGACAAACAGGTCCATCAAATTGCACGAAGCTTCCGGGATCGGTGGATTCCTAGACCTGTCAGAAAAATTAGCTGCATGGATAGGGATGATGGCAGGATGGAATTCCACAGGGGTTCAAACTGCAGCCGGTTTTCATCACAACACAATTATTGGCGTGAGCAGGTTGGGAGACCTACAGAAGCAATAGATTGTGTGAAGCAGTCAATGCTTGTAACAACTCCTGTTGATGCTTGTGTCCAGGAGGAAAGCTCTGCACCTGGTTTTGGTGGTAGTGCAACGAATGGGACAAACACAAGGAAACGTAAAAGCCGATGGGATCAGCCAATAGAGGCACACCCAGATCCAAGATTCCATCCGCACAAGGAGCAAAAAGTTCAGCCTAATTTGCTACAAAGTTTTGGATCGATTCCACAACCTGGGATAAGTGAAATGGTTCTAGATCATACAAATGGCATAAGCAGGATGGACAAAGATTGCCCTGGCTTTGTTCACAATCACCCTCAGCAAGATCAAGCAGAGGAGGAGGAGGATGAACGGCAGAACTTGCATGAGGATGTTCCTCCTGGGTTTGCGTACCCTCTCAACACTCCTCTGTTTTCATCTAATGCTTCTTCAGCCTCTGCTGATCTGGCCCAGCAAACTGTCAGCCATTCAAACAGCACTTTTGAAGTGGCTGGGGGGCATCCACAGAAGAGATTCAATTCTTGCTTGCCTGTTTCCTATGGAATTCCATTGTCCATTGTTCAACAGTTTGGGACTCCCCAGGGAGAAACTATGCAAAGTTGGGTTGTTGCTCCAGGCATGCCTTTCCATCCTTTTCCACCATTGCCCCCATATCCCCGGGACAGGAGAGATCCTCCATCCCGGACTGTTAATCCCATAACCAGAAATCAACCAGGAGAAGAGCAACAAAACTGCCATGGTTCTGCATCTTGTCATACAGATCAAAGCACTCCAAGCACATCTGGTGCCAGTCCACCTGATGTGAATGTTCCTTGTGCAAACAACCAACATGTGTTTAAACGAGTGAAGAACAATTCATATGATTTGGGAAGGAAGTACTTCCGTCAGCAGAAATGGAATAATTCAAAAGTAAGATCCCCATGGCATCGGAAATGGAATAGTTGGGGATTCATGGCGAACAATGCAAGAAATGGGGTGTGCAGTATAGGCATAGGGAATTTAGCAAATGAGCCCAAGGGTCCATATTGTTCAGAGGATGTTAGCAATAGAGTGGAGAATGCTGGCAATACTTCTTATCAGCATCCACAACATCAAAATCAGCATTGA 6867 0.4278 MESEVLGAEDPLSNCTGPSEQKGGEGRVRDAVEGRSDHVVDGIKVDIWSQILPSQEGEMQLEFLGMDGFLSDCSELNDQMGAKLAGDVKDKGGVLGGISVGGFEQASPSQGCETPLELLLTGGSLSDCAEHNECKADMSVNGSCGEVREVVEEKIDGLGGINEQLLPSQGCEMPMELLVSGGSLGNCGEDSENKVYLSVNGSCVEEVKEVVEEKNEMLGGINEQMLPSQDCEMPLELLVTGGLLCSCDADNECKADTSIEGSYGEEAREVVKEKSEIFDGTDEQTLPSQGCEMLTGGSLSSCGKDNECKVNTSINGSCWEVVEGKNDALGGINEPILPSQRVETPLESLVAGGSLSTCVKNNDYKVEMSINGSSGKDVQEAVEERSDILDGIDEQILPSQGCEMPLESLIKGSLSNCAKDDECKVNLSINASCCKQIREVVEEKSDILRMINEQILPSQGCGRPLESPSNFAEQNKHKDSGVAGGPSEFVDDILAGSQNNKIRQILPSQDCKIPLEHLSVASSPTDCAEGNVQKVTAGFDGSSAETVTEVVEEKSDIFLGMKGEMCSQISPIEENMYDLRERSSSMAPDYTLEKSDSPPPCCYSGVVDNGSSEIFAEPGYSGADVLIDAFNSTDADSSGNIGGEEKVDVRWDCVSETKCPEIICLPPRRSARARKSSQKTQTANVARKGWKTANKKPHSHGIFEIFLKVVRKKRSSFCKPARASIWGSLENITQVFYHNSDLDCGRVQNQGSRKTKGGRGCGKRNKSRAVGNSQGSKVKGRASTSHIRLKVKMGKRVSQSGSKDIVPDVVDTSDPVQTMFSDNGSELCWAMGSELQKFTVGIETQLVEEIPGTGQHLTSHGNLEKEKTSPIDSALDEVHFTDKDQETIVIPDNSDRNAATNYLSISSKTEVEALEGAIDNGYLDPGTSPDSEVINLIPDGQVGARVQEDLHDVVQASSKDSVAAADVTSSNVPLLKSKKGKKKDKLFQAGNSDVEDRLPCQASQSRARVTEKQGDGWKMENGLYSSENLVSSSSGIASSNLLSFQGCSTELLPPVEDTLNLSLDGSSESQNSKKLLPSTKAKGHKLPKSSKSGRASKSRSQFLDSGRNQRRNACRQKESQQKSARKNVNEEGVCNHVCKVESHQEIAYAVENHVVDDIGEIVTAEKTVSKDMSNLDMIQNEVVRQYLPPRIAWVRCDDCYKWRRIAAALADSIEETNCKWICKDNMDKAFADCSIPQEKSNGEINAELEISDASCEEDVYDAHLTSKEFGQRRSTVTQSSSWMLIRSNLFLHRSRRTQTIDEVMVCHCKRPVEGRFGCGDECLNRMLNIECVQGTCPCGDLCSNQQFQKRGYAKLKWFKCGKKGYGLQLQQDISQGQFLIEYVGEVLDLQTYEARQKEYASRGHKHFYFMTLNGSEVIDACAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKGEEVTFDYNYVRVFGAAAKKCVCGSPQCRGYIGGDPLSTEVIVQGDSDEEYPEPVMVNEDGETADSFDNTISTTSSFDAAEIQSKAFSKNKLDNFKTAVQQLVVGPAISESQASLEMVNSIGKLAPVQSVKVSVQTEDLMNKPITAIQQKIPMEEETTSKPLCSDQRLDWPLTRMLNKASSDSADANVSKSETPEEKQVCSKSRLLMKASRSSSSVKRGKSNSNPVNANKPPGIGNKTQVLSNKPKKLLDGSANARFEAVQEKLNELLDANGGISKRKDSSKGYLKLLLLTVASGDNGNREAIQSTRDLSMILDALLKTKSRVVLVDILNKNGLRMLHNIMKQYSREFIKIPVLRKLLKVLEYLALRGILTLEHINGGPPCPGMESFRDSMLTLTEHNDKQVHQIARSFRDRWIPRPVRKISCMDRDDGRMEFHRGSNCSRFSSQHNYWREQVGRPTEAIDCVKQSMLVTTPVDACVQEESSAPGFGGSATNGTNTRKRKSRWDQPIEAHPDPRFHPHKEQKVQPNLLQSFGSIPQPGISEMVLDHTNGISRMDKDCPGFVHNHPQQDQAEEEEDERQNLHEDVPPGFAYPLNTPLFSSNASSASADLAQQTVSHSNSTFEVAGGHPQKRFNSCLPVSYGIPLSIVQQFGTPQGETMQSWVVAPGMPFHPFPPLPPYPRDRRDPPSRTVNPITRNQPGEEQQNCHGSASCHTDQSTPSTSGASPPDVNVPCANNQHVFKRVKNNSYDLGRKYFRQQKWNNSKVRSPWHRKWNSWGFMANNARNGVCSIGIGNLANEPKGPYCSEDVSNRVENAGNTSYQHPQHQNQH* 2289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0240 2288 Pfam CW-type Zinc Finger 1193 1239 IPR011124 GO:0008270
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 1062 1127 - -
Vvi18g0240 2288 SMART PostSET_3 1478 1494 IPR003616 -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 2269 2288 - -
Vvi18g0240 2288 SUPERFAMILY SET domain 1282 1491 IPR046341 -
Vvi18g0240 2288 Gene3D - 1192 1247 - -
Vvi18g0240 2288 Pfam SET domain 1364 1470 IPR001214 GO:0005515
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 1958 1981 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 459 487 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 1062 1077 - -
Vvi18g0240 2288 ProSiteProfiles SET domain profile. 1353 1470 IPR001214 GO:0005515
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 1110 1125 - -
Vvi18g0240 2288 ProSiteProfiles Post-SET domain profile. 1478 1494 IPR003616 -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 2132 2191 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 1666 1701 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 2020 2057 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 2149 2191 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 767 781 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 1941 1981 - -
Vvi18g0240 2288 ProSiteProfiles AWS domain profile. 1301 1351 IPR006560 GO:0005634|GO:0042054
Vvi18g0240 2288 PANTHER SET DOMAIN PROTEINS 751 1970 - -
Vvi18g0240 2288 SMART shorttest3 1301 1352 IPR006560 GO:0005634|GO:0042054
Vvi18g0240 2288 Pfam AWS domain 1316 1350 IPR006560 GO:0005634|GO:0042054
Vvi18g0240 2288 Gene3D SET domain 1248 1507 IPR046341 -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 670 694 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 2265 2288 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 989 1020 - -
Vvi18g0240 2288 FunFam Histone-lysine N-methyltransferase 1252 1508 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 748 785 - -
Vvi18g0240 2288 SMART set_7 1353 1476 IPR001214 GO:0005515
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 1 31 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 1093 1109 - -
Vvi18g0240 2288 ProSiteProfiles Zinc finger CW-type profile. 1187 1241 IPR011124 GO:0008270
Vvi18g0240 2288 CDD SET_SETD2 1352 1494 IPR044437 GO:0010452|GO:0046975
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 1078 1092 - -
Vvi18g0240 2288 MobiDBLite consensus disorder prediction 1640 1701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0240 Vvi-Chr18 2260476 2286726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0240 1336 1493 C2H2 Transcription Factor Family AT2G23740 34.286 1.44e-19 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi18g0240 SET 5.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0240 - - vvi:100245350 4477.55