Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0238 ATGGGTGTATGTAGAAATTGTGGATCGAGATGGGAAATCGTCGCTTCTTTCGCTGTATATGAAGGTTTCTGCAACTTGAAACAGGTGGATCTCAAGCTAAAGATCTGCAGAGGTTCATCTATCGGGAAAATTCTGGTCAGGGAGGTGAAATCTTATGTTGCTAGTAAGGTTATAGTAGGAACAGCTCGGAACCATCATGCAATCAGGTCATCCGCCGCGGTTGCAAAGTACTGTGCAAAGAAACTACCAAAGGATTGTTCAGTTCTTGCTGTGAACAATGGGAAAGTTGTGTTCCAGAGAGAAGCTTCTATGAGAACTACTGTTGATTCACAAGAAAAAGAGGAACATCGCCGGAATGGTTTGCTCGGTGGAATTCAGCAGTCAGTGAGTAAGAAATCAAAGGCATTAAATCATGGCAAGGTAAATGAGGAGCCATCAACCATCTGTGATCCAAGTGCTTGCCAGAGTTTGGAGTTGGGGCTGGTTAATGGTGGTACAGATTGTAAGGAGAGTGAGCCAAAACAAATTTGTTCCATTTGTGCCCCACTCTCTGCTATGCCTGAGAATTCATGTAGTCAATCCATAGAAGGATCTTCTGGTGACAGCCATCATGAAGATGATTCACTGGCTATTGTGCCTGTTCAGAAGCTAGAGGCATCATCGAGTTCAATCTCTCTGTTGATCAGAGAATTGCCTGAACTGAGACCTGGTTGGCCGCTCCTCCGCCGGGCCATTTTACCAGACCGGCAAACTTCTACCAAATCCTCAGTGCGGCAGATCTCTGTGGTTCAGTGGGCAATGAGGTTGCCCAGTAGGAACTTTCCATCTGCAGCCAGTTTGGATAATATAGAAAGTAGTTGTGATGGGGATGAAGACCTATCTACCAATTTAGATGGTGAAAGTGGTGCAATTGTTCCAGTAGGAACTGTGAATGCATCTGCTCCACCTTCTCCCAGCCGCAGTTCAACAAAGCTGGCTAAAGAATTGGAGGGTCTTCATGAGAAGTACTCAGCAACTTGTAGACTGTTCAAGTTTCAAGAACTCTTCTCGGCAACATCAAATTTCATGCCTGAGAATTTGATTGGAAAAGGTGGAAGCAGTCGGGTATATAGAGGTTGTCTTTCTGATGGCAAGGAATTGGCAGTGAAAATCTTGAAGCAATCTGATGATATATTGAAAGAGTTCCTCTTGGAAATTGAGATTATTTCTACCTTGCATCACAAGAACATCATTTCCCTTTTGGGCTTCTGTTTTGAGAACAATAATCTTCTCCTGGTTTATGATTTCTTATCAAGAGGAAGCCTGGAGGAGAACCTTTATGGTAATAAAAAGGATCTTTTTGCATTTGGTTGGAGTGAGAGATACAAGGTTGCTGTGGGTGTAGCTGAGGCACTGGATTATCTGCACTGTGGCAGCGCTCAAGCCGTGATCCACGGGGATGTAAAATCATCAAATATACTATTAGCAGATGATTTTGAGCCACAGCTCTCTGATTTTGGACTAGCTAAATGGGCCTCAACTTCCTCATCACATATAACCTGCTCTGATGTTGCTGGCACCTTCGGTTACATGGCTCCTGAATACTTCATGTATGGCAAAGTAAATGAGAAGATAGATGTCTACGCATTTGGTGTTGTCCTCCTTGAGCTTCTTTCGGGAAGAAAACCGATCAGCAGTGATTATCCAAAAGGTCAAGAGAGCCTGGTTATGTGGGCAAAGCCAATTCTATATGGTGGGAAGGTTTCTGAATTATTGGACCCAAGCTTGGGCAGTAACTATGACTCCAGCCAGATGGAGAGGATGGTATGGGCTGCTATTCTCTGTATCAGACGTGCGCCAAGAGCTCGGCCACAAATGAGCCTTGTCTTAAAGCTCCTCCAAGGTGACGCGGAGGCAACCAAATGGGCAAGGTTGCAAGTCAACGCTTGTGAAGGGTCTGACACGCCAGATGATGAAGCTTTTCCCCATTCAAATCTCCAGTCCCATCTTAACCTTGCTTTACTTGATGTTGAGGAAGATTCACTCTCCATGAGTAGCATTGAGCAAAGTGTCTCGTTAGAGGACTACTTGCAAGGCAGGTGGAGCCGCTCATCAAGCTTCGACTAA 2106 0.4478 MGVCRNCGSRWEIVASFAVYEGFCNLKQVDLKLKICRGSSIGKILVREVKSYVASKVIVGTARNHHAIRSSAAVAKYCAKKLPKDCSVLAVNNGKVVFQREASMRTTVDSQEKEEHRRNGLLGGIQQSVSKKSKALNHGKVNEEPSTICDPSACQSLELGLVNGGTDCKESEPKQICSICAPLSAMPENSCSQSIEGSSGDSHHEDDSLAIVPVQKLEASSSSISLLIRELPELRPGWPLLRRAILPDRQTSTKSSVRQISVVQWAMRLPSRNFPSAASLDNIESSCDGDEDLSTNLDGESGAIVPVGTVNASAPPSPSRSSTKLAKELEGLHEKYSATCRLFKFQELFSATSNFMPENLIGKGGSSRVYRGCLSDGKELAVKILKQSDDILKEFLLEIEIISTLHHKNIISLLGFCFENNNLLLVYDFLSRGSLEENLYGNKKDLFAFGWSERYKVAVGVAEALDYLHCGSAQAVIHGDVKSSNILLADDFEPQLSDFGLAKWASTSSSHITCSDVAGTFGYMAPEYFMYGKVNEKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWAKPILYGGKVSELLDPSLGSNYDSSQMERMVWAAILCIRRAPRARPQMSLVLKLLQGDAEATKWARLQVNACEGSDTPDDEAFPHSNLQSHLNLALLDVEEDSLSMSSIEQSVSLEDYLQGRWSRSSSFD* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0238 701 SMART serkin_6 355 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0238 701 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 324 429 - -
Vvi18g0238 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Vvi18g0238 701 ProSiteProfiles Protein kinase domain profile. 355 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0238 701 Gene3D Transferase(Phosphotransferase) domain 1 430 644 - -
Vvi18g0238 701 FunFam Putative receptor-like serine/threonine-protein kinase 430 642 - -
Vvi18g0238 701 PANTHER OS08G0249100 PROTEIN 57 639 IPR046958 -
Vvi18g0238 701 SUPERFAMILY Protein kinase-like (PK-like) 337 626 IPR011009 -
Vvi18g0238 701 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Vvi18g0238 701 Pfam Protein kinase domain 358 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0238 701 CDD STKc_IRAK 361 628 - -
Vvi18g0238 701 Gene3D Phosphorylase Kinase; domain 1 319 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0238 Vvi-Chr18 2246354 2249883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0238 310 622 Trihelix Transcription Factor Family AT1G68690 44.548 1.39e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vvi18g0238 Pkinase 3.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0238 - - vvi:100267665 1300.8