Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0237 ATGTGGAGTCCAACACCAAACGATGGTATTAGAGAAGGGAAGAGGAAAAACAGTAGCGCAAGTCCATCAAGAGAGAGAAAGAGAGAGAGAAATCGGCAAATGGATCTCCCGCCGTTAATTCATCACCACCCCAATTCTTCAAGGTATGCTCATATCCCTTCTCAATTGCCCGATGATCCTAATTTCTATGGTAATCACCGCCACCACCACCATCTTCTGCAACTTTCGCCGGCACTCCCTCCGCCACCTCCGCCACCATCGTACCGTCCTCTCACCGTTCCTCCACCGCCGCCGCCCTTCAGCCCCCACCAATCTCAATTCACTTTTCGTAGCGCTAACCCTAGCCCTAACCCTATTCGTCTGATTGATGACGAACCCGGATCTCTCCATCACCACCACCACCGCCATCTTGATGTGCGTCGGTCACCACATAGGGTTTCTAATCGGACCCTTTTGGACGATGATCGTCACCGTCTTCGCGTGCACCACTTTGATAATTCACGTCCCGAGTTTTGGGACCCTTCCAGGGTTTCGACCGAGAACCGGCCGCCGAGGCTGTACCATGTCATCCGATCGGATCACGAGACCAGTCATAACCGATCATTTAATCACAATCCCGTTTCACCGTTCCGTGCAATCGGTGAGTTTAGGCATGATCCGGAGGGTAGTTCTAGGTTTAGGGATGAATTGAATGGTGGATTTGAACATAAACGGGTCGAGGAGTTGGTGTGGGGTCGAGGTGAGGGTCGTAGCCATGATGATTTTGATCGCCACAGCCATTTGGTACAGAATGCTAACAAATCTTTGAGGAATATTGGTTTTGGTGATTCTCATTTTGTTGTGGAACCCGACTCCTCAAGTTTGGGGAATTATGACTCAAGATACGGCTCGTCACGTGATGAGGAGTTCATTAGGAATGGCAGAGGTGATGGAGTGAGTGAAAATCAGAGGTGGGCTCATAGTAGACAACCCCAAAGAGACGCGGCCAACTATTTAATTGGTCTGGAAAACAATGAGATTGATGATGGCGGTGGGGTTCAGGTTTTCTCCTTCAAACGAGGCCCCAATGCCCTGGAGTTGGGAAAATTTACTAATAGGGGGAGCAGGGAGGGTAGTCATGAATTCACTCGCTCCCCCAGAAAGAAAATACAGAAGAAGAGTGCCCTTCTCAGGATTCAACTGCAGAAGCCTAGTCCTAGAAAGAGAGATGATGGGCAGTTTTATTATGATGAGTCCACCTCTAGTCAATATAGAGGTAAAGAGCCCCTTGAATATTTGGATCATGGAATGGCAGACAAGAGAGAAAGGAGTCCAGTAGAGCTTGATGTTTCTTTCAAATCCAATTCACTAGTAGCCAAGGCAATTATGGCCCCTTCAAGCCCCACGGTTGTTTCTGATAGAAATTTGTGTTTGATACCTAGGAACAGAGAGCTTAGGAAAATTACACTGCCTAATATGGATAATTCAAGTTCACAGCTGAATAAACTCAATGAGGAACCTGTAAAACGGGATTGCTTGCCAAGTGTTGTGGCCGACCCATCCTTGTGTCATAAAGATCCAAAACAGTTGAAGGAGAAAGTGACAGCTTCTGGTCTTGAAACTGTGCAAACTTTTAGTTCAAAGCCTTGTTCCAGTGGGACCAATATTTCACTGGAAAACAATAGAGTGGAAGGATCTCTTAACAGTATGGTTTCAGAAAAGGTTGCTGCCAGCATTGGTTCTGGTGGAATGTCTTCACCCAAGGTCACAAAGAAGAAGAAAGTCATAAGGAAAGTATCGATTCCTATTTCTCGTGCATCAAATTCACAATTAACAAAGAAACCAGGAGAAGCTCCAGGTAGTTCCACCCTTAGGCCATCTGCAGCCTCTAGCTCCAATAATGCAGCACATCCAAAAGAGAAAATAACTTCTGCTGGTTTAATTTCAGTCACTGGTGTTAATGAAGTAACTGCATTGTCTAAGAATAACAAAGTGAATGAGTCTCTGCTGTCAAATATTTCAGAGAAAAGTGTCACTGACACTGTTTCTGGTCAGGCATGTGTAGCTGAGCTTACAGAAAAGAGGAACAGATTAAGTCCTCCTTCAGGGTTTTCCAGTCAGAAGGAAACCAACTTTCATGAGGGTCCCATAAATACTGAAGGATCCATACATGATTTGAATGTCATCTCAAATTCTGAAAAGGGTCTAACTAGATCTCCAAATGAAACAACTTATATTGACATTGATGGTATAAGTGACGTTAGCATGCAGATTTGTCAAAATGGTCCGAGTGTGTCACTTGAGAATGATGTTTTAAAAGGGTCTTCAGAGACTATGCTTTCAGTAGGAGGCAATGTTAATGTTTGTTTGTCAAGTTTAGAGGAAACAAAGATTCATGAGGGTCTTGCCAATACAAATAATTCCGTCCATGATTTGAATATTGGATCTAGTTCTGATTGTGATTTAATTAAGACACAAGAGAAAATTTCCACCTCTGATATTGGCACTGTGGGTGCTGTGAGCAGGCATCCTTGTTCTAACCACGTCAGTGTACTGCTTGAGAATCCAAGGCCTTTTTCTTTAGGAGGGAATGCGAGTGTTCCTGTTCTATGTTCTAAGGAAAACAAAACTCATGAGGGTCCCTTAAACGTGGATGGCTCCAGTAACAGGACAGGGACTGCCTTGACTTCTGACCACGGTCTTACTAAATCACAAGTGAAAATTACTGCTTCTAACACTGGTATTGTGGATGATGCTGGCAAGCAGCTGTCTCAAGATGGGGTCATCATGTCAGTTGAGAATGGTGCCATAGAGAGACCTGCAAAAGATATGGCTTCAATGGGAGGCAATCTTAATGTTGATTCTGGTAAGGATTATACACCCAAGGGTAAGAAAAAGAGAAAAATTAGAACCTCTCAGTCAGATTTGTCTCATTCAGCAAAAGTGCATGTGAAACCTCTAAATGTAATCACCTCTAGGCATGATGTGGATGCAACCTTAAGTTGTTCTATGAAGGATCCTAGCCTTGCAAATTCTTATGTTGGGAGTTTGAAGGTTGGCTCAGAAGCTTGTGAAGATAGGGTCAGTGTTTTGCATGGGAACAGTTCAATGAAAGACCTTTCTGAGGCTAAGGTTTCTTTTAGAGATGTTGATGTTGGTCAAAATGGGACTTCTCCTAAGCTCAAAAAGAGGAGGAAAGGCTTTGTTCCTGATCCAGGTTTTTCTAGCCCAATGGGGCCTGAGATCCACAAGGAATCTCTAATTCCAGATGCCTCAACGATTGGTCCTGAAGTGCCTTCAAATTCTAATGATTGTCTTACACAATCAGAAGAGCAAGTTCCAGTCTCTGGCATTACTATGTCTGCTACTGGTTTGCAGCCTTGTCTGGAGGGAAACACTGTATTGCCTGAGAACAGAACAACAAGAGGAAATTTTGAGGCCATGAGTTCAGTAGGAGATGATTCGAGTGCCAATGATATGAAATTTCTGCAACCAAGTGTTATTGTTGAGGAGTTAGCCATTCCAAGTTTGCAATCTTCTTGTCCATCAGGATTGAGGGTTGAGCTGATAGAAACTCCAGGTATGTCTTCTGTTGATCATCAAAATGAGATTATGGGCCTGGAAAGTGGAATTAGAGAAAGAATCAGTGTACATGGTCTGGAAGAGCCGGGTATGCTTCGCAGGGGGACTGCTGACTGCAAAAGTACTGCAGCCCTTGAGACTCTGGACTTGAATCGTAGACAACTCAGTACAGGTATGGAATGTGATACTCATACTCTTATGAAGGATGATAAACAACCTACCGTATCAAACTATCTGTCTATAGCTGCTGATGGCAATGGAGTCTCTCCTACTAACTCCAATGATGAACTGATGCAATCTCTGCCTGATACACTTTCCAACATGGCCTCTCCTGAAACCTTGCCCCTTATTCCTGGTCTACACACGTTGGATACTGAACTATCAGTTGAGCAAATTTCAGATCAAAAGGGTTGTGGAGATGACAGAAAATCAGATGAAAAGCCTATGGTTGATTGTGGTTCTGTTTTATTTGCCCATAATTCATGTTCACAGAGTTCCGAAAGTAATTTTAAATTAGATGATGCAATAGGAAGTGATAATTCAATCAATGGGAAAACAGTACAACCATCATCACAGGATACCAAAAGAACAACACACAGTGTAAATCTTATTAGTGGAGAGTTGAATGGGAGCAAAAACCATCTAAATAATTTGGTTCCTAGGGTTTTTCCAGCTCCTTCATCCTTTTTCCTTGCCAATTCAAAGAAGACAGCTTCTTCAACTCACATTGCAAAACCCCGAACATGGTATCGAACTGGGGCTTCGTCTTCATCATTAAAGAAGCCTCTCTCGATTGCATTTCCTCCACAAAGGCAGTTGAAAAAAATTGGAAAGGTACAAGGTACTTCTTACATTCGTAAAGGCAACAGCCTTGTAAGAAAACCTGCTCCAGTTGCTGTTATTCCCCAGGGTTCACATGGTTTGAGTTCCTCTGTTTACCGATTGAATCCTTCTGGTGTAGATGAAATGAGAAAGAGAACAGGATCTGAAAGCAGAACTGATGTTATTGACCCATCTAATCGCTCAAGCACAGGAGCAACAGATGCTCCTTCTGAGAGGCCTCAAACACCTCCATTACCCTATTCCACCAAATTACCAAAATGCACTACCATCTCTTCAGGTGATTGCACAACTTCCCCATTGGTGGATCCTCTCCTAAATGGTTGTTCAGGAAATATGCCAGACCCTGCAGAGAATATCAAAGTGCCAATGTCTTCTGAGGATGGAGCAAAGTCTTCTGGAAGTACAGAAAATCAAACTGGTTTGATCAATAATTTGGAAAGCCAGAGTGTCTTAAATGATGGAAATTCAGAGTCTTCAAAATTGAAGAGGGTAACATATGTGAAGCGCAAGTCAAACCAGTTAGTTGCTGCTTCAAATCCACATGACATGTCTGTTCAAAATGCGGATAAAACCCCAGCATTATCCTCTGATGGTTACTACAAGAGGAGGAAAAATCAGCTCATTAGAACGTCGTTGGAAAGTCACATCAAGCAGACAGTTGCCATTCCAGATGACGGTTCAAACTCTGAGGGGCAAAGGCCCCCCAAGCTTGTTTCAAGCAAAAGTTCTAGCAAGAGGCCATCTGATAAAGTTTTATCAAAGACACGTGAACCTTCAAAATTCTCTTTAGTTTGGACACTAAGAGGTGCACAGTCATCAGAAAAAGATGGTAATTCAGTTCATAGTCAAGGGGTATTGCCTTCTCTATTTCCATGGAAAAGAGCAACATACTGGAGAAGTTTTATGCATAATCCAGCTTCGATTCCCAACAGTACTTCGTTATCAATGATCAGGAAATTGCTACTCTTGAGAAAGAGAGATACAGTTTACACGAGGTCAACTGGAGGATTTTCCCTCCGAAAATCCAAGGTATTAGGTGTCGGTGGGTCTAGTCTGAAATGGTCAAAATCCATTGAAAGACAATCCAAAAAAGCTAATGAGGAAGCTACACTAGCAGTTGCTGCAGTCGAAAGGAAAAAAAGAGAACAGAATGGTGCTGCTTCTGTTATTTCTGAGACAGAAAGTAGAAATCATTCTTCCCGTAAGTCAGTTCATAATATAATGCTGCACCCAGGTGAGCGTATATTTCGTGTTGGTTCAGTCCGCTACAAAATGGATTCTTCAAGACGGACACTTCAGAGGATTTCAGATGGGGATTCAACATGCTCTGCAGCTCTACAATCAGAAAAGAATGCAAAGAAACCTTACATTCCAAGGAGATTGCTGATCGGCAATGATGAATATGTTCAGATTGGCAATGGTAATCAGCTTATCAGAAATCCAAAGAAACGTACTCGCATCTTGGCAAGTGAGAAAGTTCGATGGAGTTTGCACACCGCCAGGCTGCGCTTGGCTAAGAAGTGGAAGTACTGTCAGTTTTTCACAAGATTTGGGAAATGCAACAAGGATGATGGAAAATGTCCATATATTCATGATCCCTCTAAAATTGCAGTCTGCACAAAGTTTCTGAATGGTTTATGTTCCAACCCCAATTGCAAATTGACTCATAAGGTCATTCCAGAAAGAATGCCAGACTGTTCTTATTTTTTGCAGGGTTTATGCAACAACGAAAGCTGTCCTTATAGGCATGTAAATGTGAACCCAAATGCATCTGTTTGCGAAGGCTTTCTTAGGGGCTATTGTGCTGATGGCAATGAGTGTCGGAAGAAACACAGCTATGTCTGCCCCATCTTTGAAGCTACTGGAAGCTGTCCTCTAGGATCCAAATGCAAACTTCACCATCCCAAAAACCGAAGCAAAGGAAAGAAGAAGAAACAATCAAGAGAGCTAAATGCCCAAGGAAGGTACTTTGGTTTTAGGCATGTCAACAATCGTGATCCAGAAAAGGTGGTGTCTGAAAAGGACACTGCAAAGAACAATGATGACATATCATTTCAAGAAGGAAGATTTGCTGATTATATCAGCCTGGATGTTAGTGATGAAGACATTGGAAGTATCAATGGTCCAAGGACCCAGCAAACAACCTTGTTTGGCAGTGAACCATCATATTTGCATTTGGACGATCTGGATGAGCTGATTAAACCAGTCCTTATAATGAATAAGAATTTGACAGCATAA 6642 0.4277 MWSPTPNDGIREGKRKNSSASPSRERKRERNRQMDLPPLIHHHPNSSRYAHIPSQLPDDPNFYGNHRHHHHLLQLSPALPPPPPPPSYRPLTVPPPPPPFSPHQSQFTFRSANPSPNPIRLIDDEPGSLHHHHHRHLDVRRSPHRVSNRTLLDDDRHRLRVHHFDNSRPEFWDPSRVSTENRPPRLYHVIRSDHETSHNRSFNHNPVSPFRAIGEFRHDPEGSSRFRDELNGGFEHKRVEELVWGRGEGRSHDDFDRHSHLVQNANKSLRNIGFGDSHFVVEPDSSSLGNYDSRYGSSRDEEFIRNGRGDGVSENQRWAHSRQPQRDAANYLIGLENNEIDDGGGVQVFSFKRGPNALELGKFTNRGSREGSHEFTRSPRKKIQKKSALLRIQLQKPSPRKRDDGQFYYDESTSSQYRGKEPLEYLDHGMADKRERSPVELDVSFKSNSLVAKAIMAPSSPTVVSDRNLCLIPRNRELRKITLPNMDNSSSQLNKLNEEPVKRDCLPSVVADPSLCHKDPKQLKEKVTASGLETVQTFSSKPCSSGTNISLENNRVEGSLNSMVSEKVAASIGSGGMSSPKVTKKKKVIRKVSIPISRASNSQLTKKPGEAPGSSTLRPSAASSSNNAAHPKEKITSAGLISVTGVNEVTALSKNNKVNESLLSNISEKSVTDTVSGQACVAELTEKRNRLSPPSGFSSQKETNFHEGPINTEGSIHDLNVISNSEKGLTRSPNETTYIDIDGISDVSMQICQNGPSVSLENDVLKGSSETMLSVGGNVNVCLSSLEETKIHEGLANTNNSVHDLNIGSSSDCDLIKTQEKISTSDIGTVGAVSRHPCSNHVSVLLENPRPFSLGGNASVPVLCSKENKTHEGPLNVDGSSNRTGTALTSDHGLTKSQVKITASNTGIVDDAGKQLSQDGVIMSVENGAIERPAKDMASMGGNLNVDSGKDYTPKGKKKRKIRTSQSDLSHSAKVHVKPLNVITSRHDVDATLSCSMKDPSLANSYVGSLKVGSEACEDRVSVLHGNSSMKDLSEAKVSFRDVDVGQNGTSPKLKKRRKGFVPDPGFSSPMGPEIHKESLIPDASTIGPEVPSNSNDCLTQSEEQVPVSGITMSATGLQPCLEGNTVLPENRTTRGNFEAMSSVGDDSSANDMKFLQPSVIVEELAIPSLQSSCPSGLRVELIETPGMSSVDHQNEIMGLESGIRERISVHGLEEPGMLRRGTADCKSTAALETLDLNRRQLSTGMECDTHTLMKDDKQPTVSNYLSIAADGNGVSPTNSNDELMQSLPDTLSNMASPETLPLIPGLHTLDTELSVEQISDQKGCGDDRKSDEKPMVDCGSVLFAHNSCSQSSESNFKLDDAIGSDNSINGKTVQPSSQDTKRTTHSVNLISGELNGSKNHLNNLVPRVFPAPSSFFLANSKKTASSTHIAKPRTWYRTGASSSSLKKPLSIAFPPQRQLKKIGKVQGTSYIRKGNSLVRKPAPVAVIPQGSHGLSSSVYRLNPSGVDEMRKRTGSESRTDVIDPSNRSSTGATDAPSERPQTPPLPYSTKLPKCTTISSGDCTTSPLVDPLLNGCSGNMPDPAENIKVPMSSEDGAKSSGSTENQTGLINNLESQSVLNDGNSESSKLKRVTYVKRKSNQLVAASNPHDMSVQNADKTPALSSDGYYKRRKNQLIRTSLESHIKQTVAIPDDGSNSEGQRPPKLVSSKSSSKRPSDKVLSKTREPSKFSLVWTLRGAQSSEKDGNSVHSQGVLPSLFPWKRATYWRSFMHNPASIPNSTSLSMIRKLLLLRKRDTVYTRSTGGFSLRKSKVLGVGGSSLKWSKSIERQSKKANEEATLAVAAVERKKREQNGAASVISETESRNHSSRKSVHNIMLHPGERIFRVGSVRYKMDSSRRTLQRISDGDSTCSAALQSEKNAKKPYIPRRLLIGNDEYVQIGNGNQLIRNPKKRTRILASEKVRWSLHTARLRLAKKWKYCQFFTRFGKCNKDDGKCPYIHDPSKIAVCTKFLNGLCSNPNCKLTHKVIPERMPDCSYFLQGLCNNESCPYRHVNVNPNASVCEGFLRGYCADGNECRKKHSYVCPIFEATGSCPLGSKCKLHHPKNRSKGKKKKQSRELNAQGRYFGFRHVNNRDPEKVVSEKDTAKNNDDISFQEGRFADYISLDVSDEDIGSINGPRTQQTTLFGSEPSYLHLDDLDELIKPVLIMNKNLTA* 2214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 1639 1661 - -
Vvi18g0237 2213 SMART c3hfinal6 1975 2001 IPR000571 GO:0046872
Vvi18g0237 2213 SMART c3hfinal6 2028 2053 IPR000571 GO:0046872
Vvi18g0237 2213 SMART c3hfinal6 2055 2081 IPR000571 GO:0046872
Vvi18g0237 2213 SMART c3hfinal6 2082 2104 IPR000571 GO:0046872
Vvi18g0237 2213 SMART c3hfinal6 2002 2026 IPR000571 GO:0046872
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 9 37 - -
Vvi18g0237 2213 ProSiteProfiles Zinc finger C3H1-type profile. 1973 2002 IPR000571 GO:0046872
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 871 891 - -
Vvi18g0237 2213 ProSiteProfiles Zinc finger C3H1-type profile. 2028 2054 IPR000571 GO:0046872
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 597 632 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 938 972 - -
Vvi18g0237 2213 FunFam zinc finger CCCH domain-containing protein 3 2003 2054 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 1686 1723 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 1 107 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 76 103 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 691 712 - -
Vvi18g0237 2213 PANTHER CCCH ZINGC FINGER 852 2210 - -
Vvi18g0237 2213 FunFam Zinc finger CCCH domain-containing protein 7 2056 2117 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 1850 1871 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 597 633 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 1686 1714 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 1520 1538 - -
Vvi18g0237 2213 Gene3D - 2056 2118 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 360 382 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 1489 1668 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 1047 1073 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 1549 1572 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 1593 1629 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 874 891 - -
Vvi18g0237 2213 ProSiteProfiles Zinc finger C3H1-type profile. 2077 2105 IPR000571 GO:0046872
Vvi18g0237 2213 Gene3D - 2000 2055 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 688 712 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 395 422 - -
Vvi18g0237 2213 MobiDBLite consensus disorder prediction 123 144 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi18g0237 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0237 - - vvi:100262507 4304.98