Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0230 ATGTTTGGTGATGGGAATACGAGCAATGCGGATGGGAATGAACACACGGCACCAGCTGTTCTTTGCAGGAGTGAAGCAGTGCAAAACGGGTTTGCGGTTGGAACTGGCATTGATGTCACTGATGGGAGCTCGAGTGGGGGTTTCCAAACTTATAAGAGGCGGAAGCGCAGGAAGGGGAGTTTAGAAACTGAACCTATAAAAGATGGAAGGTGTTTGGTCAAAGCGGGGACTCAATTAGCTGATGAGACTGTAAAACAATCAATGGATGTAGGTTTACTCAATAATTTTTCTAAGCGAGCGGTTATTCCTATGATAGATCATCATGCTATTGTGAATGGATTAGATGACAGCCCACAGCAGCATTGGAGAAATATTGTACTGGACCAGATGTACCGATCATTAAGTGATAGTGAAGGTGGTATTCGGGGCTGTGTCCGAGCTGCACTCCTATCTTGTCCAGAAGTTGATCATACAACCACAATTAAGAAACCTGTGCACTTTCACAAAGATGTACGCTGTCCTCCCCACACAGGCTTGTTGCCAAATGAATCTGCAAGCAGAAGTCATGTGGGTGTAACATCTAATGGATCTCTCAGTGAATCAGATCATCATACTATCACTGAGCTGTGTCGGCGATCTTTCTTTAAGTTGATAATGTCAGAGAAGTTTGCATCACTATGTAAACTAATGTTGGAAAACTTCCAAGGAATCAAGGTTGACAATTTTTTTGATTTTAGTCTTATACACTCAAGGATGATTGAAGGAGCTTATGAGCGTTCACCCATGCTTTTCTCTTCAGATGTTCAGCAGGTATGGAAAAAGCTTCAAAGAATTGGTACTGAAATAGTTTCTCTTGGAACGACCCTTTCGGAAATGTCAAGGACTTCTTATTCTGAATTGGTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAGGTCTGTACCAGGGAATCAGACTCGCACACTAAACTAGAGCAACTAGTGGCTTGTGGTGTGTTCAAAGTTTGCAGTTGCAGACATTGTGGTGAGAAGGCAGATGGGAGAGATTGCTTAGTATGTGATTCCTGTGAGGAAGTATACCATATTTCCTGTGTTGAGCCTGCTGTCAAAGTGATTCCCCACAAAAGTTGGTATTGTGTTGACTGCATTGCGAGTAGGTTACCCCATGAGAACTGTGTGGTCTGTAAGAAGCTGAATGCTCAGAGAACCCTAATTAATGGGGTTGGTGATGATATCATATCAATGAATGAAGAAACAGATATGGAATTGGAAGAGAGTTCCAATTGCATAACAGAAGTTGGAATTCAACAACAGAAAGAAACCAAATACTTCCAACTTTGTAAAATTTGTGGAAGTGACATGGAATTTGGCGAACATCTGTTGGAATGTGGCCACCCATTCTGCCCTAATAAATACTACCATAAGAGTTGCCTGACAAGTACAGAATTAAGGATGTATGGTCCCTGTTGGTACTGCCCTTCCTGTCTTTGTAGAGCTTGCCTTACTGATCGTGACGATGAGAAGATCATTCTTTGTGATGGCTGTGACCATGCATACCACATTTATTGCATGAATCCTCCGCGCACTTCAATTCCAAGAGGCAAATGGTTTTGCAGAAAATGCGATGCTGATATCCAGAAAATACGCAAGGCAAAAATGGTATTTGAGGACCTTGAAAGGGAAAGGAAACAGAAAGGTGAACAGGTGATCGATAAAGATGAAGAGGGACCGATGGATATTCTACTGAATGCGGCCCAGACTCTTAACTTGCAGGAAGAATTGGCTGCCATCCGCATGGATAGGTAA 1815 0.427 MFGDGNTSNADGNEHTAPAVLCRSEAVQNGFAVGTGIDVTDGSSSGGFQTYKRRKRRKGSLETEPIKDGRCLVKAGTQLADETVKQSMDVGLLNNFSKRAVIPMIDHHAIVNGLDDSPQQHWRNIVLDQMYRSLSDSEGGIRGCVRAALLSCPEVDHTTTIKKPVHFHKDVRCPPHTGLLPNESASRSHVGVTSNGSLSESDHHTITELCRRSFFKLIMSEKFASLCKLMLENFQGIKVDNFFDFSLIHSRMIEGAYERSPMLFSSDVQQVWKKLQRIGTEIVSLGTTLSEMSRTSYSELVEGAVLSASEDGKNEVCTRESDSHTKLEQLVACGVFKVCSCRHCGEKADGRDCLVCDSCEEVYHISCVEPAVKVIPHKSWYCVDCIASRLPHENCVVCKKLNAQRTLINGVGDDIISMNEETDMELEESSNCITEVGIQQQKETKYFQLCKICGSDMEFGEHLLECGHPFCPNKYYHKSCLTSTELRMYGPCWYCPSCLCRACLTDRDDEKIILCDGCDHAYHIYCMNPPRTSIPRGKWFCRKCDADIQKIRKAKMVFEDLERERKQKGEQVIDKDEEGPMDILLNAAQTLNLQEELAAIRMDR* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0230 604 Coils Coil 551 578 - -
Vvi18g0230 604 SUPERFAMILY FYVE/PHD zinc finger 339 400 IPR011011 -
Vvi18g0230 604 MobiDBLite consensus disorder prediction 178 197 - -
Vvi18g0230 604 Gene3D - 263 388 - -
Vvi18g0230 604 ProSiteProfiles Zinc finger RING-type profile. 450 498 IPR001841 -
Vvi18g0230 604 Pfam PHD-finger 500 546 IPR019787 -
Vvi18g0230 604 Pfam PHD-finger 341 386 IPR019787 -
Vvi18g0230 604 SUPERFAMILY FYVE/PHD zinc finger 499 551 IPR011011 -
Vvi18g0230 604 MobiDBLite consensus disorder prediction 181 197 - -
Vvi18g0230 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 503 IPR013083 -
Vvi18g0230 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 572 IPR013083 -
Vvi18g0230 604 ProSiteProfiles Zinc finger PHD-type profile. 497 547 IPR019787 -
Vvi18g0230 604 SMART PHD_3 340 386 IPR001965 -
Vvi18g0230 604 SMART PHD_3 502 545 IPR001965 -
Vvi18g0230 604 SMART PHD_3 449 499 IPR001965 -
Vvi18g0230 604 ProSiteProfiles Zinc finger PHD-type profile. 447 501 IPR019787 -
Vvi18g0230 604 ProSiteProfiles Zinc finger PHD-type profile. 338 388 IPR019787 -
Vvi18g0230 604 PANTHER OS02G0192300 PROTEIN 243 403 - -
Vvi18g0230 604 MobiDBLite consensus disorder prediction 44 63 - -
Vvi18g0230 604 FunFam PHD finger protein EHD3 isoform A 228 389 - -
Vvi18g0230 604 SUPERFAMILY FYVE/PHD zinc finger 445 499 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0230 Vvi-Chr18 2150109 2165756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0230 499 591 C2H2 Transcription Factor Family AT3G01460 33.333 1.76e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi18g0230 PHD 3.3e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0230 - - vvi:100247132 1257.28