Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0215 ATGGATTGTCACTGCATCAAGCTTATGCATGCTGTGTTGCTATGGGTGATTGCAGCAGCAGCAGCAGCAGCAGGAACAGCATCAGCCCAAACCATTGCGCCGGACTGCCAAGCTACATGTGGGGGCGTCACCATTCCATACCCGTTTGGCACAACGGAAGGTTGTTACTTGAACAGAAACTACTTGATAACTTGTAACAACACCTTCAGCCCTCCAAAACCATTTCTCCGGACCGGTAATATTGAAGTCCTAAACATATCGCTCGTTGATCATTATCTGCGCGTCCTCACCCCTGTAGGCAGTGATTGTTATAACGAGAAGGGCGGGCGTCGACAAGTCACTGCCCGCACTACTTTATCAAGGTTCCCCTTCTCAAATACGCGCAACAAGTTCACAGCCATCGGGTGCGACACCTTTGCAGTGATCATGAATGGTATGAATGGCCAAAGCATCTCAACCGGGTGTTTGTCCATGTGCGACAGTATCCAAAGTGTGACCAATGGGTCATGCTCCGGAATAGGGTGTTGCCAGACCTCCATTCCTAAAGGTCTCCTCAATTTTAATGTGACTGTTAGCAGCTTTAGCAACCACTCCGACATCTTGAGCTTTAATCCCTGCAGCTATACTTTCTTAACTGAAGAAGACTCCTTCAACTTCTCTTCTGCTGATCTTATAGATCTGCAGAACAGAAGTCACGTCCCAACTGTGCTGGATTGGGCCGTGGGAGAGCAAACGTGTGAAGAAGCTCAGAAGAACTTGACAAGTTTCGCATGTCAGGCAAATAGTATTTGTTTTGACTCCAACAATGATTATGGGTATCAATGCAATTGCTCAGCAGGTTACCAAGGGAACCCATACCTCCCCAGTGGTTGCCAAGATATTGACGAGTGTGGAGATCCAAATCTCAATCAGTGCACAAAAAATTGCATTAACACACTAGGGAGTTATACTTGTTCTTGCCCCAAAGGGTACCATGGAGATGGCAGACAAGATGGAGAAGGTTGCATTGCTGATGATCAGTTACTAGCGATCAAGATTGCCATTGGTATTAGCATTGGCTTTTTGGCATTAATAATTGGGAGCTCATGGTTGTATTGGATACACAAGAGAAGAAAGTTCATTAAACTCAAAGAAAAATTCTTTTGGCAAAATGGTGGTTTAATGTTACAACAACAACTTTCTGGGCAAGACGGATCCAATGAAACGGTTAAAATTTTTACTGCAGAAGAGCTTGAGAAGGCTACCAACAAGTACGATGAAGGTAAAATCATCGGCACTGGAGGATATGGAACAGTTTATAAGGGAATTTTGGTTGATGGTAGAACAGTTGCAATCAAGAAGTCTAAGATAGTGGATCAAAGCCAAATTGAGCAATTTATAAATGAGGTAGTTATACTATCTCAAATCAATCATAGAAATGTGGTCAAACTCTTAGGTTGTTGTCTGGAGACTGAAGTTCCTTTATTAGTTTATGAATTCATCACCAATGGCACCTTGTTTGACCACATTCATGATGAAGGTAAGGCATCCAACATCTCATGGGAAGCTCGTCTAAGGATTGCAGCAGAAACTGCTGAAGTGTTATCATATTTGCATTCTGCAGCTTCTATACCAATAATTCATAGGGATGTTAAGTCTAATAACATTCTTTTGGATGATAATTATACTGCAAAAGTGTCGGATTTTGGTGCTTCAAGATTGGTTCCAATGGATCAAAGTCAATTATCTACAATGGTTCAAGGAACTTTGGGATATTTAGACCCTGAATATCTGCAAACAAGCCAATTAACTGAGAAAAGTGATGTTTATAGCTTTGGAGTTGTCCTTGTGGAGCTACTAACGGGAAAACAAGTACTCTCATCTGACAGGTCTGAAGAGCAAAGAAGTTTAGCTATGTATTTTCTTTCTTCATTAAAAGAGGATCGATTATTTCAAGTTCTTGAAAACTATATAATGAAGGATGAAAATACTCAACAGATTAAAGAAGTTGCTACACTTGCGAAGAAATGCTTAAGAGTAAAAGGAGAAGAAAGACCCTCTATGAAGGACGTAACAATGGAACTAGAGAGGATAAGAAATATAAAAAACAACCGATGGATTGACATCAATCTGATGCATGCCATGTTGCTATGGGTGATAGCGGCAGCAGCAAAAGCAGCATCACAAACCATTAAGCCAGACTGCGAAGCTACATGTGGGGATGTTAGCATCCCATACCCTTTTGGCACAAGAGAAGGTTGCTACTTGAATGATGACTTCCTCATAGCTTGTAACCATTCTCTTAGCCCTCCAAAACCACTTCTATGGAATAGTAGCTTTAACCTCCAAGTCTTGAATATATCGATTGAGGATCATCGGCTGCGCATCTACACCTTTGTGGGCCGTGATTGCTACGACAAGATGGGTAAGCAATATGATCAGCCAACTTTAGCCTATGCGAACCTACCAAGGTTCCCCTTCTCCGACAAAGGTAACAGATTCACAGCCATTGGATGTGACACCATCGCTGTATTCAATGGTTTGAACGGTGCAGATGACTTCACAACAGGGTGTTTGTCCCTGTGTAACAGCATCCGAAGTGTAACTAACGGGTCCTGCTCCGGCATAGGCTGTTGCCAAACCTCCAATATTCCCAAAGGCCTCTTCAGTTATTATGCGAGTGTGGGAAGCTTCTACAACCACACCAAAGTCTGGAGCTTCAATCCCTGCAGTTACGCCTTCTTAGCGGAAGAAGAATCTTTCAACTTCTCCTCAGCTGATCTTAAAGATCTGCAAAACAGAACTGTTTTCCCCACCTTGCTTGATTGGGCGGTCGGGAACAAAACATGCGAAGAAGCCAAGAAGAACTTGACGAGTTACGCATGTAAAGATAATAGCTATTGTTATAACTCCGATAATGGTCCTGGATACCGCTGCAACTGCTCCTCTGGTTTCCAGGGGAATCCATATCTTCCCAATGGCTGTCAAGATATTGATGAGTGTGCAGATCCAAAGCGCAACGAGTGTACAAAGGTTTGCATTAACACACCCGGGAGTTATACTTGTTCTTGCCCCAAGGGGTACCATGGAAATGGCAGACGGGATGAAAATGGCGATGGTTGCACTCCTCATGATGATCAATTACTAATTGTTAAGATTGCAGTTGGTATTTTCATCGGCCTTATAGCACTACTAATCACTAGCTCATGGCTATATTGGGGACTCAAGAAAAGAAAATTCATCAAGCTCAAAGAAAAGTTCTTTCAGCAAAATGGAGGTTTAATGTTACAACAACAACTTCATGGACGAGAAGGATCTAGTGAATCAGTTAAAATCTTTACAGCTGAAGAACTGGAAAAGGCTACTAATAAGTATGATGAGGATACAATCATTGGTCGAGGAGGATATGGCACAGTTTATAAGGGAATTCTTGCGGATGGCAGAGTAGTTGCAATTAAGAAGTCCAAGTTAGTTGATCAAACCCAAATTGAGCAATTTATAAATGAGGTGGTCGTGCTATCCCAAATCAATCATAGAAATGTGGTTAAACTCTTGGGATGTTGTTTAGAAACAGAAGTGCCTTTACTAGTCTATGAATTCATCACCAATGGCACTCTCTTCGACTACATACATAACAAAAGCAAGGCTTCTTCCATTTCATGGGAAACTCGTTTAAGAATTGCTGCAGAAACTGCGGGAGTTTTGTCATATTTGCACTCTTCTGCTTCTATACCAATAATTCATAGAGATGTGAAGTCTACCAACATTCTTCTGGATGATAATTACACAGCAAAAGTGTCTGATTTTGGAGCTTCAAGGTTGGTTCCGCTAGATCAAACTCAGTTATCTACAATGGTGCAAGGAACTCTCGGATATTTAGATCCTGAATATTTGCATACAAGTCAGTTAACTGAAAAAAGTGACGTCTATAGCTTCGGAGTCGTACTTGTGGAATTACTAACGGGAAAGAAAGCACTTTCCTTCGATAGGCCAGAGGAGGAAAGAAGTCTAGCCATGCATTTTCTTTCTTCATTGAAAAATGATCGCTTGTTTCAAATTCTTGAGGATTATATAGTACCAAATGATGAAAACATGGAGCAGCTTAAGGATGTTGCTAAGCTTGCAAAGAGATGCCTAGAAGTAAAAGGGGAGGAGCGACCGACTATGAAGGAAGTGGCAAGGGAATTAGACGGAATGAGAATGATGACAAAACATCCATGGGTTAATATTGAACTGAATCCAGAAGAAACTGAGTGCGTGGGCATCGGTCTTATATCATTACTAATTGGCAGCTCTTGGTTATACTGGGGACTCAAGAAAAGGAAGTTTATTAAACTCAAAGAGGAGTTCTTTCAACAAAATGGTGGTCTAATGTTACAAAAGCAACTTTCTAAACGAGAAGGATCTACTGAAACAATCAAAATCTTTACTGGTGCAGAGTTAGAGAAGGCAACTAACAAGTATAATGAGAGTAAAATTATTGGTCATGGAGGATACGGAACTGTCTATAAAGGAACTTTAACTGATGGGAGAATAGTTGCCATCAAGAAGTCGAAGATGGTGGATAAAAGTCAAATTGAGCAATTCATAAATGAGGTGCTTGTGTTGTCACAGATCAATCATCGAAATGTGGTCAAGCTTTTGGGTTGTTGTCTAGAGACAAAAGTTCCTTTGTTAGTTTATGAATTCATTACTAATGGCACTCTTTTCGACCACATACATAATAAGAGCAACACATCTATCATTCCCTGGGAAATTCGCTTGAGGATTGCTACTGAAACTGCAGGAGTCTTATCATATTTACATTCTGCAGCATCAATACCTATCATCCATAGAGATGTTAAATCCACTAACATACTCTTGGATGATAACTATACAGCAAAGGTTTCAGATTTTGGAGCTTCAAGGTTAGTTCCTCTAGATCAAACTCAATTATCTACAATGGTACAAGGAACTCTTGGATACTTGGATCCTGAGTACTTGCTTACAAGCCAATTGACTGAGAAAAGCGATGTTTATAGTTTTGGAGTTGTTCTTGTGGAACTATTAACGGGAGAGAAGGCACTTTCTTTTGATAGACCGGAGGACAAGAGAAGTCTAGCTATGTATTTTCTTTTTTCATTAAGAGATGATCGCCTTTTTCAAGTTCTTGATGAACATATAGTGAATGAAGAAAACATTGAGCAGCTGAAGGAGGCTGCTAAGCTTGCAAAAAGGTGCTTAAGATTGAAAGGAGATGAAAGACCTACTATGAAGGAAGTAGTAATGGAATTAGAAGGATTGAGAATCATGAAAACACATCCATGGATTGATTCACAAGAGAATGAACACTTATTTAGTGATTTTACCCACACATACGATGATGGCGATGGCAATAGCAATGGTGTCACAATTAGTGCTATATATGAAAGCCTACGAGGTCATATGATGTTACCAGGAAATGATAGAAGATGA 5433 0.4071 MDCHCIKLMHAVLLWVIAAAAAAAGTASAQTIAPDCQATCGGVTIPYPFGTTEGCYLNRNYLITCNNTFSPPKPFLRTGNIEVLNISLVDHYLRVLTPVGSDCYNEKGGRRQVTARTTLSRFPFSNTRNKFTAIGCDTFAVIMNGMNGQSISTGCLSMCDSIQSVTNGSCSGIGCCQTSIPKGLLNFNVTVSSFSNHSDILSFNPCSYTFLTEEDSFNFSSADLIDLQNRSHVPTVLDWAVGEQTCEEAQKNLTSFACQANSICFDSNNDYGYQCNCSAGYQGNPYLPSGCQDIDECGDPNLNQCTKNCINTLGSYTCSCPKGYHGDGRQDGEGCIADDQLLAIKIAIGISIGFLALIIGSSWLYWIHKRRKFIKLKEKFFWQNGGLMLQQQLSGQDGSNETVKIFTAEELEKATNKYDEGKIIGTGGYGTVYKGILVDGRTVAIKKSKIVDQSQIEQFINEVVILSQINHRNVVKLLGCCLETEVPLLVYEFITNGTLFDHIHDEGKASNISWEARLRIAAETAEVLSYLHSAASIPIIHRDVKSNNILLDDNYTAKVSDFGASRLVPMDQSQLSTMVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELLTGKQVLSSDRSEEQRSLAMYFLSSLKEDRLFQVLENYIMKDENTQQIKEVATLAKKCLRVKGEERPSMKDVTMELERIRNIKNNRWIDINLMHAMLLWVIAAAAKAASQTIKPDCEATCGDVSIPYPFGTREGCYLNDDFLIACNHSLSPPKPLLWNSSFNLQVLNISIEDHRLRIYTFVGRDCYDKMGKQYDQPTLAYANLPRFPFSDKGNRFTAIGCDTIAVFNGLNGADDFTTGCLSLCNSIRSVTNGSCSGIGCCQTSNIPKGLFSYYASVGSFYNHTKVWSFNPCSYAFLAEEESFNFSSADLKDLQNRTVFPTLLDWAVGNKTCEEAKKNLTSYACKDNSYCYNSDNGPGYRCNCSSGFQGNPYLPNGCQDIDECADPKRNECTKVCINTPGSYTCSCPKGYHGNGRRDENGDGCTPHDDQLLIVKIAVGIFIGLIALLITSSWLYWGLKKRKFIKLKEKFFQQNGGLMLQQQLHGREGSSESVKIFTAEELEKATNKYDEDTIIGRGGYGTVYKGILADGRVVAIKKSKLVDQTQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFITNGTLFDYIHNKSKASSISWETRLRIAAETAGVLSYLHSSASIPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDQTQLSTMVQGTLGYLDPEYLHTSQLTEKSDVYSFGVVLVELLTGKKALSFDRPEEERSLAMHFLSSLKNDRLFQILEDYIVPNDENMEQLKDVAKLAKRCLEVKGEERPTMKEVARELDGMRMMTKHPWVNIELNPEETECVGIGLISLLIGSSWLYWGLKKRKFIKLKEEFFQQNGGLMLQKQLSKREGSTETIKIFTGAELEKATNKYNESKIIGHGGYGTVYKGTLTDGRIVAIKKSKMVDKSQIEQFINEVLVLSQINHRNVVKLLGCCLETKVPLLVYEFITNGTLFDHIHNKSNTSIIPWEIRLRIATETAGVLSYLHSAASIPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDQTQLSTMVQGTLGYLDPEYLLTSQLTEKSDVYSFGVVLVELLTGEKALSFDRPEDKRSLAMYFLFSLRDDRLFQVLDEHIVNEENIEQLKEAAKLAKRCLRLKGDERPTMKEVVMELEGLRIMKTHPWIDSQENEHLFSDFTHTYDDGDGNSNGVTISAIYESLRGHMMLPGNDRR* 1811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0215 1810 FunFam Wall-associated receptor kinase 2 1194 1412 - -
Vvi18g0215 1810 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 715 1394 IPR045274 GO:0007166
Vvi18g0215 1810 ProSitePatterns Protein kinases ATP-binding region signature. 1124 1147 IPR017441 GO:0005524
Vvi18g0215 1810 FunFam Fibrillin 2 292 331 - -
Vvi18g0215 1810 CDD EGF_CA 293 327 - -
Vvi18g0215 1810 FunFam Wall-associated receptor kinase 2 1557 1773 - -
Vvi18g0215 1810 SUPERFAMILY Protein kinase-like (PK-like) 1463 1752 IPR011009 -
Vvi18g0215 1810 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 1006 1017 IPR000152 -
Vvi18g0215 1810 Gene3D Laminin 993 1030 - -
Vvi18g0215 1810 CDD STKc_IRAK 1124 1392 - -
Vvi18g0215 1810 Pfam Protein kinase domain 1118 1386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0215 1810 Pfam Protein kinase domain 1481 1748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0215 1810 Pfam Protein kinase domain 418 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0215 1810 Gene3D Transferase(Phosphotransferase) domain 1 1194 1404 - -
Vvi18g0215 1810 Gene3D Transferase(Phosphotransferase) domain 1 494 706 - -
Vvi18g0215 1810 Gene3D Transferase(Phosphotransferase) domain 1 1557 1776 - -
Vvi18g0215 1810 Pfam Calcium-binding EGF domain 293 329 IPR001881 GO:0005509
Vvi18g0215 1810 Pfam Calcium-binding EGF domain 990 1026 IPR001881 GO:0005509
Vvi18g0215 1810 Gene3D Laminin 941 992 - -
Vvi18g0215 1810 Gene3D Laminin 244 295 - -
Vvi18g0215 1810 Pfam Wall-associated kinase 168 278 IPR013695 GO:0004674|GO:0016020
Vvi18g0215 1810 SMART egf_5 245 292 IPR000742 -
Vvi18g0215 1810 SMART egf_5 296 336 IPR000742 -
Vvi18g0215 1810 SMART egf_5 993 1035 IPR000742 -
Vvi18g0215 1810 SMART egf_5 942 989 IPR000742 -
Vvi18g0215 1810 ProSiteProfiles Protein kinase domain profile. 1118 1401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0215 1810 Pfam Wall-associated receptor kinase galacturonan-binding 728 790 IPR025287 GO:0030247
Vvi18g0215 1810 Pfam Wall-associated receptor kinase galacturonan-binding 36 95 IPR025287 GO:0030247
Vvi18g0215 1810 FunFam Wall-associated receptor kinase 2 941 988 - -
Vvi18g0215 1810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1239 1251 IPR008271 GO:0004672|GO:0006468
Vvi18g0215 1810 SUPERFAMILY EGF/Laminin 989 1025 - -
Vvi18g0215 1810 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Vvi18g0215 1810 ProSiteProfiles Protein kinase domain profile. 1481 1763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0215 1810 Gene3D Laminin 296 337 - -
Vvi18g0215 1810 Gene3D Phosphorylase Kinase; domain 1 387 493 - -
Vvi18g0215 1810 Gene3D Phosphorylase Kinase; domain 1 1086 1193 - -
Vvi18g0215 1810 FunFam Wall-associated receptor kinase 2 1088 1193 - -
Vvi18g0215 1810 FunFam Wall-associated receptor kinase 2 494 708 - -
Vvi18g0215 1810 ProSitePatterns Calcium-binding EGF-like domain signature. 293 318 IPR018097 GO:0005509
Vvi18g0215 1810 CDD EGF_CA 990 1023 - -
Vvi18g0215 1810 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 309 320 IPR000152 -
Vvi18g0215 1810 ProSiteProfiles Protein kinase domain profile. 418 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0215 1810 FunFam Wall-associated receptor kinase 2 1451 1556 - -
Vvi18g0215 1810 SUPERFAMILY Protein kinase-like (PK-like) 1100 1389 IPR011009 -
Vvi18g0215 1810 ProSiteProfiles EGF-like domain profile. 990 1029 IPR000742 -
Vvi18g0215 1810 Gene3D Phosphorylase Kinase; domain 1 1452 1556 - -
Vvi18g0215 1810 FunFam Wall-associated receptor kinase 2 388 493 - -
Vvi18g0215 1810 CDD STKc_IRAK 1487 1754 - -
Vvi18g0215 1810 ProSiteProfiles EGF-like domain profile. 250 292 IPR000742 -
Vvi18g0215 1810 SMART serkin_6 1118 1401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0215 1810 SMART serkin_6 1481 1763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0215 1810 SMART serkin_6 418 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0215 1810 SUPERFAMILY Protein kinase-like (PK-like) 401 689 IPR011009 -
Vvi18g0215 1810 ProSiteProfiles EGF-like domain profile. 293 330 IPR000742 -
Vvi18g0215 1810 ProSitePatterns Protein kinases ATP-binding region signature. 1487 1510 IPR017441 GO:0005524
Vvi18g0215 1810 SUPERFAMILY EGF/Laminin 292 328 - -
Vvi18g0215 1810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Vvi18g0215 1810 SMART egfca_6 293 336 IPR001881 GO:0005509
Vvi18g0215 1810 SMART egfca_6 990 1035 IPR001881 GO:0005509
Vvi18g0215 1810 CDD STKc_IRAK 424 691 - -
Vvi18g0215 1810 FunFam Fibrillin 2 989 1028 - -
Vvi18g0215 1810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1602 1614 IPR008271 GO:0004672|GO:0006468
Vvi18g0215 1810 ProSitePatterns Calcium-binding EGF-like domain signature. 990 1015 IPR018097 GO:0005509
Vvi18g0215 1810 FunFam Wall-associated receptor kinase 2 244 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0215 Vvi-Chr18 1952680 1968096 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0215 9 701 Receptor kinase-like Gene Family AT1G21230 49.081 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi18g0215 Pkinase 2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0215 - - vvi:100262500 2806.16