Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0212 ATGGCAGAAGCAGCGGTGGCTCAGGCCAAGCCTGGTTGCCCGGATCGCTGTGGGAATGTTAGCATCCCATATCCATTCGGCACAAAGAAAGACTGCAACCACAGTCAACATTTTCTGTTGCACTGCAACGATTCAGTGATGCCTCCCAAACTAACTCTAGGGATGAACTTACATGTGGTGAGCATCTCCTTAGGTGAGTTGAAAATCTTGAACTTTCTGGGCAGGGATTGTTATAATAGTTATGGCGGGCTGGTTTACGAGAACGACCCCTGGCTGCGTTTAGGCTCAGGTTACACAATCTCTGGAAAGAGAAACAAGTTCATTGCAGTTGGCTGCGACACGTACGCGATTGTTCGGGCTTATAAAGGTGAAGAAAGGTACACAACTGGGTGCATGTCTGTATGTGATAGCATCACAAATGTAAAAAGTGGATCTTGCTCTGGGATTGGTTGTTGTGAGACCTCCATTCCTGAAGGAACTACCAATTTTACTGTTAAGTTAAGCAGCTATAATAACCACAGAAGCGTTTGGGCCTTCAATCCCTGCAGCTATGCTTTTGTTGTTGAAGAAACACACTTCAAGTTCTCTTCCAATCAATTTAGGGATCTCAATAATACAGAAAATCTTCCCGTGGTGTTGGACTGGAGAATAGGCAAAGAAAGGTGCAAGGCAGCACGAAAAACCGAGACTTACGCCTGTAAGGGGAAAAGCGAGTGCTACGAACCCGATGATTGGTCCGGCTATCTTTGCAAGTGCTTGGATGGTTACCATGGGAATCCTTACCTCCCTGATGGTTGCCAAGATATTAATGAATGTGATGATCCAAGCCTCAATAAGTGTGTAAAAAAAGGGAGATGCAAGAACACCCCAGGGAATTATACTTGTTCTTGTCCCAAGGGGTACCATGGAGATGGCAGACAAGATGGAGATCGCTGTAATCTAGATCACTTACAAGTGATTCCTGTTGTTCTTGGTGCGGGTATTGGCTTTATGATATTGCTTCTCAGTATCTCTTGGCTGTACTGGGGACTCAAGAAAAGGAAGTTCATTAGACTCAAGGAGAAGTTCTTTCAACAAAATGGTGGTTTAATGTTGCAACAACAACTTTCTAGACAAGAAGGATCTGATGAAACAATCAAAATTTTTACTGCTGGGGAGCTCGAGAAGGCCACTAACAAATATGATGAGAGTAACATTGTTGGTCGTGGAGGGTATGGAACAGTCTACAAAGGAACTTTAACTAATGGGAGAATAGTTGCAGTCAAAAAGTCGAAGATGATAGATAAAAGTCAAATTGAGCAATTCATAAATGAAGTGCTCGTGTTGTCTCAAATCAATCATCGAAATGTGGTAAAGCTTTTGGGTTGTTGTTTGGAAACTGAAGTTCCTTTACTAGTTTATGAATTCATTACTAATGGCACCCTCTTCAACTATATACATGGTGAAAGGAAGGCATCTACCATTTCTTGGGAAGTTCGCCTACGGATTGCCACTGAAACTGCTGGAGTCCTGTCATATTTACATTCTGCAACATCAACTCCAATCATTCATAGAGATGTTAAATCCACCAATATACTTTTGGATGATAATTACACAGCAAAGGTTTCAGATTTTGGAGCTTCAAGGTTGGTCCCCCTAGATCAAGCTCAGTTGTCTACGTTGGTGCAAGGTACTCTTGGATACTTGGATCCTGAGTATTTGCTTACGAGCCAATTGACGGAAAAAAGTGATGTTTATAGTTTTGGAGTCGTCTTTGTAGAGCTATTGACTGGGGAAAAGGCACTTTCGTTTGATAGGTCGGAGGAGGAAAGAAGTCTTGCTATGTATTTTCTTTCTTCATGGAAAGATGATAATCTTTTTCAAGTTCTTGACAAGCACATAGTAAATGAGGGAAATATTGAACAGTTGAGGGAAGCTGCAAACCTTGCAAAAAGGTGCTTAAGATTGAAAGGAGATGAGAGACCTACCATGAAGGAAGTATCAATGGAGTTAGAAAGAATTAAAATGATGGAAAAACAGGCATGGATTGATTCAAAAGAAAAGGAACAGTTACATGGTGAATCTTCTCAGGCATATGATAATGATTGTAGTTTTGGTTTTACAAGTGCTTCATTTAATAGTTTAAGGTTCTTTGCGGTTGGTTGCGACACTTATGCACTTCTCCAAGGCTACCAAGGAGGAGATCTTTACACAACTGGCTGCATGTCTATATGTTCCAGCGAGAAGCAAGTCCAGGATGGATCTTGCTCAGGGGCTGGTTGTTGCCAGGTCTCATTCCCAGAAGGATTAGATGATACTACTCTGACATTAAGCAGCTACTTCAATCATACAAAAGTTCATGACTTCAATCCCTGCAGCTATGCTTTTATTGCCGAAGAATCAGCCTTCAATTTCTCCTCCAAAAATCTTACCAATTTACAGGATATGGAAAAGCTTCCTAGGGTGGTTGATTGGTCAATTGGCAATGAAACATGCCAGGTGGCTAAAACCAACCCGAGCAGTTACGCCTGTAAGGAGAATAGCACGTGCTCGGAACCCAGTGGCCGATCCGGCTATCTTTGCAAGTGCTTTGATGGTTACCATGGGAATCCTTACCTCGATGGTTGCCAAGATATTGATGAATGTGAGAATTCAAGCCTCAATAAGTGTGTAGAAAAAGCAAGGTGCAAGAACATCCCAGGGAATTATACTTGTTCTTGCAGGAAGGGGTACCATGGTGATGGCAGAGAAGATGGTGATGGCTGTAATCCAAATATGTTGCAAGTAATTCAGATTGCCCTCGGTGTCAGCATTGGCCTTATATCATTACTAATGGGTAGCTCTTGGTTATACTGGGGACTCAAGAAAAGGAAGTTCATTAAACTCAAAAAGAAGTTCTTTGAGCAAAATGGTGGTTTAATGCTGCGCCAACAACTTTCTAGTCAAGAAGGATCCAATGAAACAGTTAAAATCTTTTCTGCTGAAGAGCTTGAGAAGGCCACCGACAAGTATGCTGAGAATAAAATCATTGGTCAAGGGGGATATGGAACAGTTTATAAAGGAACCTTAACTAATGGGAGAATAGTTGCGATCAAGAAGTCGAAGATGGTGGATAAAAGTCAAATTGAGCAATTCATAAATGAAGTGCTTGTGTTGAGTCAAATCAATCATCGAAATGTAGTAAAGCTTTTGGGTTGTTGCTTAGAAACAGAAGTTCCTCTCCTAGTTTATGAATTCATCACTAATGGCACCCTCTTCGACTACATACATAAAGGGAAGAAGATATCCACCAGTTCCTGGGAAGTTCGCTTAAGGATTGCTACTGAAACTGCCGAAGTCCTATCATATTTACATTCTGCAGCATCAACACCAATCATTCATAGAGATGTTAAATCCACTAACATACTTTTGGATGACAATTACACAGCAAAAGTTTCAGATTTCGGAGCTTCAAGGTTGGTTCCCCTAGATCAAACTCAATTGTCTACAATGGTGCAAGGTACTCTTGGATACTTAGATCCTGAGTATTTGCTTACGAGCCAATTGACAGAAAAAAGTGATGTTTATAGTTTTGGAGTTGTCCTTGTGGAGTTATTAACAGCAAAAAAGGCACTTTCATTTGATAAACCTGAAGAGGAGAGAAGTTTAGCTATGTATTTTCTTTCTTCATTGAAAGATGATCGTCTTTTTCAAGTTCTTGATGAACGCATAGTGAACGAGGAAAATATTGAGCAGTTAAAGGAAACTGCCAACCTTGCAAAAAAATGCTTGAAATTAAAAGGAGATGAGAGGCCTACTATGAAAGAAGTAGCAATGAAGCTAGAAAGAATGAGAATGGTGGAAATGCATCCATGGACTGATCCAGAAGAGAATGAATACTTACTCGGTGAATCTTCCCATACAGTTGATAATGGTTGTAGTATTGGTTCCACAAATACTGCATACGACAGCTTAAAGGGCCATATAATGCTACCCGTGAAAGATGGAAGATGA 3972 0.4091 MAEAAVAQAKPGCPDRCGNVSIPYPFGTKKDCNHSQHFLLHCNDSVMPPKLTLGMNLHVVSISLGELKILNFLGRDCYNSYGGLVYENDPWLRLGSGYTISGKRNKFIAVGCDTYAIVRAYKGEERYTTGCMSVCDSITNVKSGSCSGIGCCETSIPEGTTNFTVKLSSYNNHRSVWAFNPCSYAFVVEETHFKFSSNQFRDLNNTENLPVVLDWRIGKERCKAARKTETYACKGKSECYEPDDWSGYLCKCLDGYHGNPYLPDGCQDINECDDPSLNKCVKKGRCKNTPGNYTCSCPKGYHGDGRQDGDRCNLDHLQVIPVVLGAGIGFMILLLSISWLYWGLKKRKFIRLKEKFFQQNGGLMLQQQLSRQEGSDETIKIFTAGELEKATNKYDESNIVGRGGYGTVYKGTLTNGRIVAVKKSKMIDKSQIEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITNGTLFNYIHGERKASTISWEVRLRIATETAGVLSYLHSATSTPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDQAQLSTLVQGTLGYLDPEYLLTSQLTEKSDVYSFGVVFVELLTGEKALSFDRSEEERSLAMYFLSSWKDDNLFQVLDKHIVNEGNIEQLREAANLAKRCLRLKGDERPTMKEVSMELERIKMMEKQAWIDSKEKEQLHGESSQAYDNDCSFGFTSASFNSLRFFAVGCDTYALLQGYQGGDLYTTGCMSICSSEKQVQDGSCSGAGCCQVSFPEGLDDTTLTLSSYFNHTKVHDFNPCSYAFIAEESAFNFSSKNLTNLQDMEKLPRVVDWSIGNETCQVAKTNPSSYACKENSTCSEPSGRSGYLCKCFDGYHGNPYLDGCQDIDECENSSLNKCVEKARCKNIPGNYTCSCRKGYHGDGREDGDGCNPNMLQVIQIALGVSIGLISLLMGSSWLYWGLKKRKFIKLKKKFFEQNGGLMLRQQLSSQEGSNETVKIFSAEELEKATDKYAENKIIGQGGYGTVYKGTLTNGRIVAIKKSKMVDKSQIEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITNGTLFDYIHKGKKISTSSWEVRLRIATETAEVLSYLHSAASTPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDQTQLSTMVQGTLGYLDPEYLLTSQLTEKSDVYSFGVVLVELLTAKKALSFDKPEEERSLAMYFLSSLKDDRLFQVLDERIVNEENIEQLKETANLAKKCLKLKGDERPTMKEVAMKLERMRMVEMHPWTDPEENEYLLGESSHTVDNGCSIGSTNTAYDSLKGHIMLPVKDGR* 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0212 1323 ProSiteProfiles EGF-like domain profile. 871 910 IPR000742 -
Vvi18g0212 1323 CDD STKc_IRAK 1003 1270 - -
Vvi18g0212 1323 FunFam Fibrillin 2 866 911 - -
Vvi18g0212 1323 ProSitePatterns Calcium-binding EGF-like domain signature. 268 295 IPR018097 GO:0005509
Vvi18g0212 1323 ProSitePatterns Protein kinases ATP-binding region signature. 1003 1026 IPR017441 GO:0005524
Vvi18g0212 1323 FunFam Wall-associated receptor kinase 2 967 1072 - -
Vvi18g0212 1323 SUPERFAMILY Protein kinase-like (PK-like) 978 1268 IPR011009 -
Vvi18g0212 1323 SUPERFAMILY Protein kinase-like (PK-like) 377 665 IPR011009 -
Vvi18g0212 1323 FunFam Uncharacterized protein 271 310 - -
Vvi18g0212 1323 FunFam Wall-associated receptor kinase 2 1073 1288 - -
Vvi18g0212 1323 CDD STKc_IRAK 400 667 - -
Vvi18g0212 1323 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 286 297 IPR000152 -
Vvi18g0212 1323 Gene3D Phosphorylase Kinase; domain 1 968 1072 - -
Vvi18g0212 1323 ProSitePatterns EGF-like domain signature 2. 854 869 IPR000742 -
Vvi18g0212 1323 Gene3D Transferase(Phosphotransferase) domain 1 1073 1286 - -
Vvi18g0212 1323 Gene3D Transferase(Phosphotransferase) domain 1 470 693 - -
Vvi18g0212 1323 Pfam Calcium-binding EGF domain 268 312 IPR001881 GO:0005509
Vvi18g0212 1323 ProSiteProfiles Protein kinase domain profile. 394 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0212 1323 ProSitePatterns Calcium-binding EGF-like domain signature. 871 898 IPR018097 GO:0005509
Vvi18g0212 1323 SMART serkin_6 997 1273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0212 1323 SMART serkin_6 394 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0212 1323 SMART egf_5 221 267 IPR000742 -
Vvi18g0212 1323 SMART egf_5 271 313 IPR000742 -
Vvi18g0212 1323 SMART egf_5 824 870 IPR000742 -
Vvi18g0212 1323 SMART egf_5 874 916 IPR000742 -
Vvi18g0212 1323 Pfam EGF domain 881 909 IPR024731 -
Vvi18g0212 1323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Vvi18g0212 1323 CDD EGF_CA 871 907 - -
Vvi18g0212 1323 CDD EGF_CA 268 304 - -
Vvi18g0212 1323 Pfam Wall-associated receptor kinase galacturonan-binding 13 66 IPR025287 GO:0030247
Vvi18g0212 1323 SMART egfca_6 871 916 IPR001881 GO:0005509
Vvi18g0212 1323 SMART egfca_6 268 313 IPR001881 GO:0005509
Vvi18g0212 1323 ProSiteProfiles EGF-like domain profile. 268 313 IPR000742 -
Vvi18g0212 1323 SUPERFAMILY EGF/Laminin 267 305 - -
Vvi18g0212 1323 Gene3D Plasmodium vivax P25 domain 212 318 - -
Vvi18g0212 1323 FunFam Wall-associated receptor kinase 2 364 469 - -
Vvi18g0212 1323 SUPERFAMILY EGF/Laminin 870 908 - -
Vvi18g0212 1323 ProSitePatterns Protein kinases ATP-binding region signature. 400 423 IPR017441 GO:0005524
Vvi18g0212 1323 FunFam Wall-associated receptor kinase 2 470 687 - -
Vvi18g0212 1323 ProSiteProfiles Protein kinase domain profile. 997 1279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0212 1323 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 889 900 IPR000152 -
Vvi18g0212 1323 Gene3D Phosphorylase Kinase; domain 1 359 469 - -
Vvi18g0212 1323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1118 1130 IPR008271 GO:0004672|GO:0006468
Vvi18g0212 1323 Gene3D Laminin 864 911 - -
Vvi18g0212 1323 Pfam Protein kinase domain 997 1263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0212 1323 Pfam Protein kinase domain 394 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0212 1323 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 5 671 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0212 Vvi-Chr18 1885036 1894797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0212 7 685 Receptor kinase-like Gene Family AT1G21230 47.971 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi18g0212 Pkinase 5.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0212 - - vvi:100852995 1452.57